Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G15240_circ_g.3 |
ID in PlantcircBase | ath_circ_002658 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5245027-5246248 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G15240 |
Parent gene annotation |
Phox (PX) domain-containing protein |
Parent gene strand | + |
Alternative splicing | AT1G15240_circ_g.4 AT1G15240_circ_g.5 AT1G15240_circ_g.6 |
Support reads | 6 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G15240.3:2 AT1G15240.1:2 AT1G15240.4:2 AT1G15240.5:2 AT1G15240.2:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.17078126 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5245058-5246245(+) |
Potential amino acid sequence |
MSRIKTTIRSSAAEEASQSEDLSNVSPDHFSRYMDPSVTGVELVQLKNEQQKNSKKKSATDKQH VKELSKDPLLSMDTRSSRSWNSFPSTSKIGDGSKDPQGHRGGEGWGDVLDMMSQRKTETLAPEH LESVWAKGRNYKKKEGGKVDERVPPRWSSKAGDCNENTVNARESSQRKVVNTDSHLSSYSSAEE DEEQTKSSHSYTSEDEETVTGLNSPGTRVWDGRTKKNLGVSRIHHPLENSGRSLKKTSKGHERY QQVPGHQSGRKRSRISGHIIDDDDSDDSEDGSLTRSYSGMSATSSTSYVSAAESDLPNAPKSSL LVDSFAKLRCEVLGANIVKGSSKMFAVYSVAVTDESNHSWSIKRRFINERIEAAVMSRIKTTIR SSAAEEASQSEDLSNVSPDHFSRYMDPSVTGVELVQLKNEQQKNSKKKSATDKQHVKELSKDPL LSMDTRSSRSWNSFPSTSKIGDGSKDPQGHRGGEGWGDVLDMMSQRKTETLAPEHLESVWAKGR NYKKKEGGKVDERVPPRWSSKAGDCNENTVNARESSQRKVVNTDSHLSSYSSAEEDEEQTKSSH SYTSEDEETVTGLNSPGTRVWDGRTKKNLGVSRIHHPLENSGRSLKKTSKGHERYQQVPGHQSG RKRSRISGHIIDDDDSDDSEDGSLTRSYSGMSATSSTSYVSAAESDLPNAPKSSLLVDSFAKLR CEVLGANIVKGSSKMFAVYSVAVTDESNHSWSIKRRFINERIEAAVMSRIKTTIRSSAAEEASQ SEDLSNVSPDHFSRYMDPSVTGVELVQLKNEQQKNSKKKSATDKQHVKELSKDPLLSMDTRSSR SWNSFPSTSKIGDGSKDPQGHRGGEGWGDVLDMMSQRKTETLAPEHLESVWAKGRNYKKKEGGK VDERVPPRWSSKAGDCNENTVNARESSQRKVVNTDSHLSSYSSAEEDEEQTKSSHSYTSEDEET VTGLNSPGTRVWDGRTKKNLGVSRIHHPLENSGRSLKKTSKGHERYQQVPGHQSGRKRSRISGH IIDDDDSDDSEDGSLTRSYSGMSATSSTSYVSAAESDLPNAPKSSLLVDSFAKLRCEVLGANIV KGSSKMFAVYSVAVTDESNHSWSIKRRFINERIEAAVMSRIKTTIRSSAAEEASQSEDLSNVSP DHFSRYMDPSVTGVELVQLKNEQQKNSKKKSATDKQHVKELSKDPLLSMDTRSSRSWNSFPSTS KIGDGSKDPQGHRGGEGWGDVLDMMSQRKTETLAPEHLESVWAKGRNYKKKEGGKVDERVPPRW SSKAGDCNENTVNARESSQRKVVNTDSHLSSYSSAEEDEEQTKSSHSYTSEDEETVTGLNSPGT RVWDGRTKKNLGVSRIHHPLENSGRSLKKTSKGHERYQQVPGHQSGRKRSRISGHIIDDDDSDD SEDGSLTRSYSGMSATSSTSYVSAAESDLPNAPKSSLLVDSFAKLRCEVLGANIVKGSSKMFAV YSVAVTDESNHSWSIKR(+) |
Sponge-miRNAs | ath-miR5631 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |