Detail information of Solyc08g083140.2_circ_g.2


General Information
CircRNA Name Solyc08g083140.2_circ_g.2
ID in PlantcircBase sly_circ_002737
Alias NA
Organism Solanum lycopersicum
Position chr8: 65682540-65687123  JBrowse»
Reference genome SL2.50.38
Type   ie-circRNA
Identification method CIRI; find_circ
Parent gene Solyc08g083140.2
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Solyc08g083140.2_circ_g.1 Solyc08g083140.2_circ_g.3 Solyc08g083140.2_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered Solyc08g083140.2.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTAAGACAAAATGCAAAGTTAACTTACTCTTTTTATTTGTGGAGGCTGCAAATGATCCAATT
GCTCCAGCTAGAGGAATCCCTCGTAAAGATATTGAGgccaggtctgactgggggaagcgatgac
tcgtacgtgagacatatgctgctgagagctagaagtaggggttggagagttgtggtgttcaata
gtagagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCAGGTCTGACTGGGGGAAGCGATGACTCGTACGTGAGACATATGCTGCTGAGAGCTAGAAGT
AGGGGTTGGAGAGTTGTGGTGTTCAATAGTAGAGGATGTGGTGATAGTCCTGTGACAACTCCCC
AGGTACTCTCATTCATTACTTTGGTTGATTCATATGTTGGAAATTTCCTCCCCATTCATACAAC
TATGTATTAGTTTTGATGTGATATATAGTGATTTTTGGCCAATGCTTAAAAATTGTTGGTATGG
TTAGTTGATGGTAATCGGTAGCCCCTTTTGTGGACGGTTGATATGTGGGTGTCATTAGTGTTGA
TATGAATATTGAGGATCCTGATCAAAACAAAATTCACTTTTAAAGTCCTATAGGAATTGGAAAG
TCTTTCCTCCTCATTGCAGGGGCGGAGCTACCCCTTCGGTGGAAAATTATATTATTTATACATG
GTTAAAATAAGTTTATACGTATATAATAATATATGCCGAACGCCCTTTCGGCTATATATTTCTA
CAGATTTTGAAACCCCTTATTAAAAATGCTGCTCCGCCTCTCCTCATTGCTTTCATCATTGACG
AAGAAAAAAAGAAGTATATGGAGAAAGCTAACAAGTAGAACAATTATCTATATGATTGCCCATT
TTGCTTGTTTTTTTTCTTTTTCGGTTCATTATATTATCTGTGCATTGATGCCCGTTTCTTTTTT
AATTTGATTTTCATAGAATTGCAGGAATGATCTACATGAACCAAATATAAGTTTCTTCCTCCAT
TGCATCAATTATTAGATTGAAACTCTTCAAAGTTGATTATATCTCTTGTTTATGCAAATAATAT
GGACTTTTGTCTTCGAATGGGCTAAAAAATTTATCTTCACAAAATGTCGGTTCCCCTCTCTTGC
TTGACATGATCTGGTCTCTTTCACCAAGTGATTTCAAAAAAGGTTTAAAACATAGTGAATGAAA
ACAAGTAAAAAAGGTTTTTCAAGTCCACCCTATAGTTCAACTACGGAAGATTTCTCCTTTCTCT
TGCTTCAATAGTATATCTAGATAAAACAATTTGGTGGGTTGGAGGTATGCAACCTTCAATTGGC
TGAGAATAAAGTTAAGTTGATAATGAAGTTATTAGCGTAATAACTCTGTAAAATTATACAAGAC
CTTCATGTGAGAAATATATTAAATCTGGTGGACATTTTAATTGTAGATGTCCTTGTCAAGTTGA
AATCAAACTTACAGACAGTGAATGGTTGCCTTGGTGGTTGTATGATTTAAAGATTGTCCAAGAA
GGCAAGATCTAATGATTGATGATACCTCCAAGGGTACAGTGAAGATCCTTTAGAAATTTATTAT
AATGTAATTCTTTAAGGGAATTAGAGTGCCTCTGGGTTAGGGGAGGAAGCAAATAAGGGGGACA
AATATCTTTGATAAGAGCCTAAGAAGGGGAAGTGGGGAGTTATTTGTTGTTCTTCTCTAAATTC
TCAACTTTCATATCTTTTGGTCCTAGATACTTTTCTTCATCTATACACCTTCAAACTCGCAATC
TGGCTCATACCAGAGTATCAGACATAACTTTACGTCTAAGTTTTCCTAGGAAAAATAGGAAATT
AATGTATATTTCCATTTTTCGCATAGAAAGGAGTTCTCTATTCCTGAATTCTTCATGTGTACTG
TAGACTTTCTAAAGTCTGATTTATAGCTCCTTGTTGAACTTCTGAATTTTCTGATAATTAACTC
TATTATAATATTATCATCACTATACCTCTATATTAAAGCCCCATTTTCACCTATAAAACAATAT
AATTAACTCCATTATTCCCAAACTTGATCAGCTTTATTTCTCAAGTGGTACTGGTCAAAGTGTT
GTAGATTTTTTAGCTCGTCAATTTGTTAAGATAAAACATACAACTGCTCATGAATCAGTTGAAT
TAAGGTGAACCATATAATTTTAAGATATTACTCTTCCTCTTCTAAGTAATGTCAAAATGCAATC
GTCTTTGCCATGTAAAAGTTATCTATTCATTTTTTGTTGATAAGCTAATTTATGCAGTTCTATT
CAGCTTCATTTCTTGGTGATATGTATGAAGTGGTGGCACATGTCAGCAATCGCTATCCAGCGGC
AAATTTATATGCAGTAGGTTGGTCTCTTGGAGCAAATATTCTTGTTCGCTACTTGGGACAGGTA
ACTCAATCAATTCACTTTGTGCTTATGGCTTATCAATGTTCCTCCTTCATTTGTCCTTGTATTG
ATCTACCTTGCATCTTCAGTTTGAGCTGTTCTAAAGAATGCTATGGTGAACTTGTTAGCATATT
TAAATTTTAGAACTGTAATTGGGCTGAGTATTGATGATCTGGCTAACATCATACCGTTTCTTTA
GAAAAGGTGAACTGAATGTTTGAGCTGTTTTAAGAATGCTATGGTGTACTTGAGGAAAAATATT
TAGCTGCGTCACAATCTTCTTTTTCTCAACATTTCTTGTGCTTAGTATAACTGAATGTTTGTCA
ATAGAATTGAGTTTCATGAGCTATCAGATAATTAGACCATCTAGTAATGGTGTTCCATTTTTCG
TATAAAGATCATGTATATTGGCCAGCGTGCACGCATCTTAACAATTTCACCGGATATCTTCTAC
TTCTCATTAGCACAAGCTCGGATAACTGAAAACCTAATCTCTATCACCAGGTTATTGAGATTAT
TCCGCCGTAGCCTGATTTAAGTCTACATAAAAGAGATTCAGTGTTGTTGCTTAAAAAACTAAAC
TAGAAGGGGATGTTACAGTAACATGTATTACCTTCTTTTATCCCAAGTAGATCCTTGAGACGTC
TCGATAAACACTTATTGAACTAGAATTTTTTTTAATCATATTGAACATTATCTTTGGAGTCACT
CTACAGATCTACAAAGGGAGTCAACAATAAATGTTGAATGGGTACTACGTGTTATCTTTTTTCT
GGATCAAATTTGAACAGCTCTTTAAAGAAAATTGACTGCCAGTTGTTGTATTTGTCTTCAACAA
TATTGCCTATCAGTTGCATTATTTGTATTTTTAAAGACAATCTATAGGCAATGTAATAAAGTCG
GAGTGGATGGAGCACTTGAATTCTTATACTGCTTTCTAATAACTTTTTTGTTTAATGATGCATC
AATCGTCAATTTAACTAGAGTTAATAGAGGTGGGGGTGCTTGACTAATTGGTCACAAGTATATA
GGCGTTCACTGTAGTTGTTATTTTAGTTTGTGTTTACCTTACAATCCATTGGCCTGAGTTCATT
ATTTTAATTTATCTACTTGCTGGAGTCCATGTACTGCCCATCTCTCATATTTTATTGTTTCATT
GCAGGAATCTCATTCTTGCCTTCTCTCAGGTGCTGTTTCCTTGTGCAATCCTTTCAATTTGGTC
ATTGCAGACGAAGATTTTCACAAGGGCTTTAACAATGTCTATGACAAAGCATTAGCAAATTCTC
TTCGCAAAATTTTCAAAAAGTAATTTCATAAGTCAGTTTTCCTTTTTTTCTCAGGATACATTTG
ACCTCTTTTAAACTAGATCTCTTGTTTATAGGCATGCTCTACTGTTTGAAGATATGGAAGGTGA
ATTTAATATATCATTAGCTGCCAATGCAAAAACTGTTAGAGAATTTGATGATGGACTGACACGA
GGTATTTATTCTTGTATACATTAATACAAGAGATGTATATGATTGCATCTGAACTTACAGTAAT
TGCCTTCAATTTTGCAGTTTCATTTGGATTCAAGTCCGTGGATGATTACTATTCTAACTCAAGT
AGCTCAGATTCCATTACAAATGTCTGTACACCTCTGCTTTGTATCCAAGTAAGTTTGTTTCATC
CGTTTACCCTCCATTGTTCTTATCGTACTTTAGATTCATTTATAGATCTACAGTTCATGGTTAG
GAGAGTTATAGTGTACACTTTTCTTGGATAAAACCTGAACATCATATCATATAAAATCCCATGC
AAGAAAGCTGAAACTTGAGAGAGGATAGATGTTTAACTTTGTGTTTTCTTTAGACAATACATAT
TTTAAGTTATCTGTTGTAGGATATTTTCCCATTTATGCAACTTGGTTAACTTACTATCAAATAG
ACGTCACACTTTTCATTTGAATAAATGAATTACTTCACTTGATAAAATGCGAAGGATTTTTATG
AAATGTAATTGGGATCAGATTCTAGGAAAAGCAATGCAGCAACTATTACTCTTTCTCCAATATA
CTAGTGTAGAGAATTACATTTTTTCATATTTGAGTCTCGGATCTTTATAAGAGATAGACAATTT
GTCTAGAGTATTGCAATGACATAATAAAAAGTCTTATTGTGATTTAAAGGGAAATATTCCATCT
CTTTGTGATTCTCCTCAAAAAAAGAAAGGAGGAAAAGCAAAAGAGAGGATGAAAGGGGAAAATA
GAGAGCTAAAAGATATAGTAGTTTACTTATCAAAAAGGGATTATATTTGTTAAGATTCTGCAAG
TGGTAACTAAGACAAAATGCAAAGTTAACTTACTCTTTTTATTTGTGGAGGCTGCAAATGATCC
AATTGCTCCAGCTAGAGGAATCCCTCGTAAAGATATTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.124604854
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020