Detail information of Os06g0611900_circ_g.11


General Information
CircRNA Name Os06g0611900_circ_g.11
ID in PlantcircBase osa_circ_031363
Alias NA
Organism Oryza sativa
Position chr6: 24402015-24402436  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os06g0611900
Parent gene annotation Similar to Glycine decarboxylase P subunit. (Os06t0611900-01);Si
milar to Victorin binding protein. (Os06t0611900-02)
Parent gene strand -
Alternative splicing Os06g0611900_circ_g.10
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGTACGATTTATAGAGCCTCACCCCAATGCGTTCCAATCCATCAAGACTTGAAGAGAGCATG
CTAGACTGATGGCATGATAAACTGCAAACAACTAACttagggagtgtattgaatatttttggct
cgacagatggggttttttgaaattacgataacagaagttctcaattgggatcagatgaacttgg
agaaagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTAGGGAGTGTATTGAATATTTTTGGCTCGACAGATGGGGTTTTTTGAAATTACGATAACAGAA
GTTCTCAATTGGGATCAGATGAACTTGGAGAAAGCTTATCATATTTTATTGAAGATAGCATATC
TCAGCATAATTAATTGGATAAGGGTCATTGAAAGATAAACATGCAAATGAAAGTTGGTACTTCT
GTGTTTGTTTCAAAACAAGGTATACTTGTGTTTGGAACTGAATTAAAATAGACTTGTTACATAA
ACATGTTTAGTATAATTCATAGGCACAACTAATTGTTTTTTTAATCATCGCCATGCCAAAAGGC
CATCTGTACGATTTATAGAGCCTCACCCCAATGCGTTCCAATCCATCAAGACTTGAAGAGAGCA
TGCTAGACTGATGGCATGATAAACTGCAAACAACTAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.117100968
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017