Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038239_circ_g.2 |
ID in PlantcircBase | zma_circ_009122 |
Alias | Zm06circ00085, GRMZM2G032865_C1 |
Organism | Zea mays |
Position | chr6: 152183496-152184011 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d038239 |
Parent gene annotation |
Whole genome shotgun sequence of line PN40024 scaffold_35.assemb ly12x (Fragment) |
Parent gene strand | + |
Alternative splicing | Zm00001d038239_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d038239_T002:1 Zm00001d038239_T001:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.183093558 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
152183608-152183531(+) 152183888-152183592(+) 152183940-152184001(-) |
Potential amino acid sequence |
MSRFAGQTSTRPWVGMAGSGATASEPAAADVARDDATAAMRGAGAGAGTNASAISFGFAATAVL VSMFLLMAIFEHLIKPGLASSSSRGASGSHEDAADDDGEGRGHRHRMGGSPPARLRERDDAAPD KLCHLPKARSPGPGGARCR*(+) MKTPPTTMAKAAATATAWGDHPRLDCASATTRRRTSSVTCQRPGAQDPEVLAVADQPRAVAGST ATSNSQQLGR*(+) MRWRWPRPSPSSSAASSWEPDAPREEEEARPGLMRCSKMAMRRNMETRTAVAAKPKEMALALVP APAPAPLMAAVASSLATSAAAGSDAVAPEPAIPTHGLVDVCPANLLMYTTTTCLAVGCCWLLCC LRRRAVDQRQRAPPGPGLLAFGR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |