Detail information of AT3G10060_circ_g.2


General Information
CircRNA Name AT3G10060_circ_g.2
ID in PlantcircBase ath_circ_020759
Alias At_ciR431, AT3G10060_C2
Organism Arabidpsis thaliana
Position chr3: 3103015-3103571  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, MapSplice, PcircRNA_finder, find_circ, CIRI-full, CIRI2
Parent gene AT3G10060
Parent gene annotation Peptidylprolyl isomerase
Parent gene strand +
Alternative splicing AT3G10060_circ_g.1 AT3G10060_circ_g.3 AT3G10060_circ_g.4 AT3G10060_circ_g.5
Support reads 22/6/2
Tissues leaf/whole_plant/seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G10060.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCCTATGAGGTTTATATACAGAGATTGGTGATTGTTCCTCCCGAGCTGGCTTACGGGAAGAAA
GGAGTGCAAGAGATTCCTCCAAACGCTACGATAGAGgtactatgatataaaggttggcaatgga
gcagaggctgtgaaaggatctcgggtcgcagtacggttgtgaatacgtttcctggtttactttg
gacatgta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 301
Transcript exons: 3103015-3103072,3103168-3103242,3103322-3103411,3103494-
3103571
GTACTATGATATAAAGGTTGGCAATGGAGCAGAGGCTGTGAAAGGATCTCGGGTCGCAGTTCAC
TATGTTGCAAAATGGAAAGGGATAACGTTCATGACAAGTCGACAAGGACTTGGTGTTGGAGGTG
GAACGCCTTATGGGTTTGACGTTGGTCAATCAGAGAGAGGCAATGTTCTGAAAGGACTTGATCT
TGGTGTTGAAGGGATGCGTGTAGGCGGTCAGAGATTGGTGATTGTTCCTCCCGAGCTGGCTTAC
GGGAAGAAAGGAGTGCAAGAGATTCCTCCAAACGCTACGATAGAG

Transcript length: 306
Transcript exons: 3103015-3103571
GTACTATGATATAAAGGTTGGCAATGGAGCAGAGGCTGTGAAAGGATCTCGGGTCGCAGTACGG
TTCACTATGTTGCAAAATGGAAAGGGATAACGTTCATGACAAGTCGACAAGGACTTGGTGTTGG
AGGTGGAACGCCTTATGGGTTTGACGTTGGTCAATCAGAGAGAGGCAATGTTCTGAAAGGACTT
GATCTTGGTGTTGAAGGGATGCGTGTAGGCGGTCAGAGATTGGTGATTGTTCCTCCCGAGCTGG
CTTACGGGAAGAAAGGAGTGCAAGAGATTCCTCCAAACGCTACGATAGAG

Genomic sequence GTACTATGATATAAAGGTTGGCAATGGAGCAGAGGCTGTGAAAGGATCTCGGGTCGCAGTACGG
TTGTGAATACGTTTCCTGGTTTACTTTGGACATGTAAATGCTAACAGTTTTAACAAGCGTTGAT
GCTTAACCCAAATGTTGTGTCGCAGGTTCACTATGTTGCAAAATGGAAAGGGATAACGTTCATG
ACAAGTCGACAAGGACTTGGTGTTGGAGGTGGAACGGTATAAGGCAATCTTACAGAGTCCATTA
CTGTACTTGAATATGCAAGGATCCTTTACTGATAATAATGAATTTTTGCAGCCTTATGGGTTTG
ACGTTGGTCAATCAGAGAGAGGCAATGTTCTGAAAGGACTTGATCTTGGTGTTGAAGGGATGCG
TGTAGGCGGTCAGGTTAGTTTTTGAAACCGAAAGGCTTCACAAAGTCAGGCCACTCAAAGTCTT
GTTTTGATGACCCTATGAGGTTTATATACAGAGATTGGTGATTGTTCCTCCCGAGCTGGCTTAC
GGGAAGAAAGGAGTGCAAGAGATTCCTCCAAACGCTACGATAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.254973816
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress