Detail information of BGIOSGA014494_circ_igg.2


General Information
CircRNA Name BGIOSGA014494_circ_igg.2
ID in PlantcircBase osi_circ_014702
Alias Chr04:30183291_30188730(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28216721-28221323  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA014494_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   NN-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGCGTCCTTGATTATCTTCTGCCAGATAGACTTGCTGTTGGACAAGGTCGTCCCATTTCCAA
CAATCCATAAACAATGCCTGGAAATAAAGAAGAAAGctttgcttttaaccagagcaggtagctg
gcattcgtctccgataaaaacagcttgctttatgccaggcagctgcatgggaattaaggtctca
cactcttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGCTTTTAACCAGAGCAGGTAGCTGGCATTCGTCTCCGATAAAAACAGCTTGCTTTATGCC
AGGCAGCTGCATGGGAATTAAGGTCTCACACTCTTTTAACTGTGCAGCTTCATCTACAACCAAC
AGTTCCAGAGGTTTCAAGCACTCAGACCTGTCATCCATGGACACATTGTGCAACACATAAGAAC
TAGAAACAGTGCAGAGAATGCATTTTGTTCTTTGCAACAGGTAGACTCGAATTTCTCTCTTGCG
GTCATCATCAGAAAGGCTCAAGCGATCCCAATCAGGAAGCTTCAAGTTGATCTTCAGATATCTT
AATATTTGAACACAGAGTAATCTTGCCTTTCTGATCTTTGATTTGTTGCACACATCCGTGTGCA
CTGAGGCTAGCAGATCTGGCCACTTGAGTGGATCACTGTCCCCATGCCCTTTTCCATTCAAGAG
ATCATCGAACCATAAATTGTCATCATTATCATCATTAACATTTATCAATGCATGGAGAATATTC
AATGGTTCAACCACCTCATTCATGTACTGGAAGCTCTGACGCATCGTGGAGTTTCGTGGAAAAT
CAGTGCATAATATCTCCATGAAATAGTAGAAATCTTCCAAAAGTTCATTGCATTTGTCCTTGAC
AAATTCCTTGAGTGGTAGAACTACTGAATTTGGTCCTTTCATTTTCATCTGAACAGTGTACCAC
TTGTATTTTTTTGTCACAGGTATCTCAAGAAAATCTATCAGTGAACACAAGCAATGATTCCATC
CTTTCATACTCTCAAAACATTGTGACAGCCGCTCGGTGCGAGAGCTGAGAAAAACCACAGAGAG
ATCATGATCTTCACCTATCTTCATCCTCTTCTTGTTTCCAAACAAAACGATGTTGCTTAGATAT
TGGCCACTGCTAGCAGGAGACTCATGAACGAGCTTGACAATTCGAGATGCAACCTCTAGGACAG
CAGTATTAGTAGGGGCACAAGTAAGTGTCCGGTGTCCTGAATGCAACATTACCCAGAGTAAAGC
ACTAATGGTTTTGGTTTTACCCGTCCCAGGAGGTCCCCATATTAGTTTAATAGGAGAAGAGATT
TTTTCTGAGACCAGAACACAATCTGCAACAGCATTCAGTTGTGAATTGTTGAGCATGTACTTCT
CAAGATTAAGATCAACAGCTGATCTAGCAGCGAACCGTTGAGATAATTGGGAGCTTGATGACAT
AGCCTCATCCACTTCCTTCACAAATAAATGTTGTGCAAACAATTCAATCATCAGAAATACTACT
AACAAGATAGTGTTGTTTATATGCACTTGGGAAAATGCCATTAGTTCATTACCAAGTGTTGACA
AATAAGGGCACTGTATCATTTGAATCTTTAAAATATATCAGATTCATATTCCAATCTAAACAAC
ATACTGAAGATTTAACACGTGTGGTAGCCAAGAAGCATGACCCGCACTTCAAATTCCAAAAACA
TCACTACTCAAGCTAATTTAGCGCATATAGGAATGCCAAGATTGTAACTTTTAAGTGTGTTTCT
TACTTTAGTTGCAAAAGCAACAGTCAGAGCAATAGGTAGTTGAAACTGGAGTATCATGCATCAA
GAGCCAATAGGGTGCTGAAATTTAATGACTCAAACAATTAGACAATTAGACATGACAAATAGAT
ATGCTATTATGCATCTACAAGGAACTGGCCCTAGCACTTTGGTTGGAGGGTGTGGTTTACACCC
CCCGCTACTATTTAACTAGAATTTAGGTGCCTATTCCTTCTTAATTAAATCGAGACCAGGCTAC
ACCACAGTGTCCCACATTTTTTTATTATGCATCTACAAACTGAAAATACCTTTGACTTGTACCG
CCAGACTGTATCAACAATATGGCTGTTTCCCTTATGAAGACAATCCCAAATCCGATCATATGTC
TTCATATTTATGAGGATTACCGCGAACAATGGCTCCTTTGGTTCATTTGTTGAAAAATCAGTTT
CCACTGGAAGCACTGATGACAATCTAGCAATGAAGCAATTGCCTGGGAGATCATCATCGTCTTC
ACCACCTTTGACAATTGAACCTAGGATGTACGAAGTCGTATTTCGTGTCAAATCAGACACTTGC
TTGGGCTTTCGGGAGGTAAGGACTATTATATCACCCTCACATGGCGCATATGTTTCCTTGGATT
TCTCATCCTTTGCTGGATTTGCAACCTCAAAACAGAAGAACGTGGACTCATCGTCATGCAGCAG
TTCCTTCATTCGGGTTACTGATATGAAGTTTTGGTGAGAATAACCATCCAACGATGAAAAGACA
TCAGCATGTGTTTCTTCAAGTAATGGGTAGGTAAATGAGTTAAAGTAATTTGACGATGAAGTGA
ACGTCTCTGGGATCCTTTTCACCTGGAAAGAAACAAATAATCAACTATCTGTGACTCAATACTA
CTCCCGCCGGTCAAATATATTTGATGTTGGGGGTACTTGAACTAATACTCCCAATGTCAAATTT
ATTTGACAGGAAGGAGTAGACCAAAAAACGAAATGTTTTTAGGGAAGATAGGAGATTGCATTAA
ATTTCAGAAACAAGAGTATACAATCCAGTTACAGAATTCTAAAACTAGCAATGCTTAGGCCTTA
GAGTGCAACATAGAAAAGAGAAAGAAAGTAACTAAGAAATTGACACCTTCTGTTTGAAGAGCTC
CTTATTGAAGACGTCCTCGATAGACCAAGAGAATATTTGTCTCACCAGATAACTTAGAGCAAAC
TTGCTGAGGCTGCTGTCACGTTTCTTCAACTTCTCCCAGTAATTCACCACAGACTGGATTGCAT
CCACGCACTCAGATTTCTTGACTTGTTTCTGCCTCCTAGACTTGTTGCGAGCACTCATCTTGCT
CCCCTCTTTCTCACCCGTGCAAGCGAAGACAGCAGGAGGCAAGGTTACTTACAAATGCAAGCAG
CACAGCAAAATGGCAAGCATGAGGTCTTTCCTCATGTCGAAAGGAGATATCAACCGGCAGACGG
AGGGGCAGATACCCCAGAGAGAGAGGGTTGAACTGTTTCGATCCTCTCAAAGCAAGAGGAGTGG
CTATCGAGTTGGCGCTTCCCCATGATAGTAATGATCTTCTCGAAACGAGAGAAGTGGGCTATCG
AGTTGGAACTCTTTGAACTTCCCCATGATAGCAATGATAGCATTGGCGCAGTAAATGCGGCTCA
AAGACAAACGGGAGATTTTAGGGGAAGAGATACGGAGTTTCAAGTGAATTCCGAAATTTGGGAG
TAAATCTCAACCAACTTTCAGGTTTCAAACGACGGTTTCAACTTAGCTTCACAATTTGGAAGGA
ATTTTAATTCCATATCCTAATTGATGGAATAAACAATTCAAGTGAGATTCATGTTTCGGAACCG
TGCTAACACAAAGTCTGAATTTTCAGAAACAAAGGCTAAAATGAGTTTCCGAAATCGCAACCAA
GTCTCACGCGCATTTCGAGCGAAACTGCCCCCAAAATCAATCCATTCACGCACGAAACCAACAG
AGATTGAATTATGAACTATCCCCTACCTCATCCATGGCAGCTATTGCGCCGTCTCCGCCCAGAT
CCATGTCGCATACTCAGTGCCCCTGCCCCCCACCCCCGCAACACCAGCTGACCTGCTCGCTGCC
ATTGCCGGGGTGCGCGGCCTCGCCAGCATACCGGCGCCCGACGGCCGCCCTCGACGGGGGAGAA
CCGCCGCCCGGCGGCGCCACCGGCGAATCATCCTGCGGACGAGGCGATGGAAGGAGAACGAGAG
AAACGCTCGCGTTGGGAGGGTTCGAGAAACTCATCACGGTGTAGTGAAATCAACGGCACGTAGC
ACGTGTGCTTACGATATCCAACGGTTGGTCGCTATCCAACGGTATCCCGCGGATATGAACAAAT
TCCGCGACAAAATGGAGGGACATGATAACAAACGAGGTTATCCAGAGAACGGCATTGGATTATA
CTAGTAATACAGTACTAAAAGTCTGTATCATACGGAGTATGATTTGTCGAGTGACACAAGTGAT
AAGTGAGCTTGAGCAACCAGCGTGCATCAAAAGCTCATATGGTTCAACAAAATGTAGGGCTCAC
ATTGTCAGCAACAACACAATACTGACAGTAACACACATGGTTTTCTTCCTTCGGCAAACCCGAG
CGACAGACAACTGAACAATAAACCTTCACACCGACGCCATATGATATTCCAAGCGTCCAGACTA
ACTGAATCTTGCAAGCTTCAGACTTCTCATGAACGGTAGTTTGCCCTTGGTTTCTGCAAAGTAC
ACAACAAGAAAAGGAATGATCAACGCCAAGGTGTCAGGTATTGTTTCCAGTAATTCTTTCATTG
TCTAATTGTCAGTACCTGAAACCTTGGCCGGCTTATATGCATCGAATCCATTTTTGATAAATTC
TCTGCATCATCATGCTCGATGATAGCCTTGATTATTGCATTTGACAGATCTTTGTCATCGTTGG
CGTCGAAAAAACAACCTCGATCCTGTGCGTCCTTGATTATCTTCTGCCAGATAGACTTGCTGTT
GGACAAGGTCGTCCCATTTCCAACAATCCATAAACAATGCCTGGAAATAAAGAAGAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021