Detail information of AT1G55960_circ_g.4


General Information
CircRNA Name AT1G55960_circ_g.4
ID in PlantcircBase ath_circ_007644
Alias AT1G55960_C1
Organism Arabidpsis thaliana
Position chr1: 20928728-20929396  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI-full, CIRI2
Parent gene AT1G55960
Parent gene annotation Polyketide cyclase/dehydrase and lipid transport superfamily pro
tein
Parent gene strand -
Alternative splicing AT1G55960_circ_g.1 AT1G55960_circ_g.2 AT1G55960_circ_g.3 AT1G55960_circ_g.5 AT1G55960_circ_g.6
Support reads 2
Tissues aerial, leaf
Exon boundary   Yes-Yes
Splicing signals   CT-GC
Number of exons covered AT1G55960.1:3
AT1G55960.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGAATAACATGTTCCCATATCTCCGTGGAATCATTTGTTTCCTCCTCCAAATTCTCGATCAGA
AATTTCAAATCTTCATCAGAGACTAGTTTGGATATCcttgcctgattcgccaaccagatctaaa
gtaacttacacgtacatacttcctctgttgtggtaccatattgtgatcacattcctaatagtaa
ccaaagag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 422
Transcript exons: 20928728-20928809,20928903-20929031,20929107-20929169,20
929249-20929396
CTTGCCTGATTCGCCAACCAGATCTAAAGTAACTTACACGTACATACTTCCTCTGTTGTGGTAC
CATATTGTGATCACATTCCTTTGTGAAACAGTAGAACTTCTTCTCCTTTCCTTGCCACAATCTC
CAAGCTAGAACGTACTCTCTCGATGTCAACAAGGGAAACTTTTTAATGGTGCGACCAATCTCAA
TTCCAGTATTACTATCAACAATCTCTGCAGAGAAACCCTCGAAGACCGTGACACTTAGGTACTT
CATAGGACCACCGCCATCTTTGGGTTTGCAGCGTTTAGCAGAGTATGAAATGCGATCGTTGCTT
TTGTGAATAACATGTTCCCATATCTCCGTGGAATCATTTGTTTCCTCCTCCAAATTCTCGATCA
GAAATTTCAAATCTTCATCAGAGACTAGTTTGGATATC

Transcript length: 497
Transcript exons: 20928728-20929396
CTTGCCTGATTCGCCAACCAGATCTAAAGTAACTTACACGTACATACTTCCTCTGTTGTGGTAC
CATATTGTGATCACATTCCTTTGTGAAACAGTAGAACTTCTTCTCCTTTCCTTGCCACAATCTC
CAAGCTAGAACGTACTCTCTCGATGTCAACAAGGGAAACTTTTTAATGGTGCGACCAATCTCAA
TTCCAGTATTACTATCAACCTGCAACTGCTCATGCTCAACCACAGTCTTATCCCATAGTTTCCT
ATAATCATTGTCCATGTAAAAGTCCCTCACAATCTCTGCAGAGAAACCCTCGAAGACCGTGACA
CTTAGGTACTTCATAGGACCACCGCCATCTTTGGGTTTGCAGCGTTTAGCAGAGTATGAAATGC
GATCGTTGCTTTTGTGAATAACATGTTCCCATATCTCCGTGGAATCATTTGTTTCCTCCTCCAA
ATTCTCGATCAGAAATTTCAAATCTTCATCAGAGACTAGTTTGGATATC

Genomic sequence CTTGCCTGATTCGCCAACCAGATCTAAAGTAACTTACACGTACATACTTCCTCTGTTGTGGTAC
CATATTGTGATCACATTCCTAATAGTAACCAAAGAGCAAAATGATAAGTAAAGAAGCAACAACA
AATTGCGACAGATAGAGGGAGAGAGAGGTTTTTTGGTTGAATTTGACCTTTGTGAAACAGTAGA
ACTTCTTCTCCTTTCCTTGCCACAATCTCCAAGCTAGAACGTACTCTCTCGATGTCAACAAGGG
AAACTTTTTAATGGTGCGACCAATCTCAATTCCAGTATTACTATCAACCTGCAACTGCTCATGC
TCAACCACAGTCTTATCCCATAGTTTCCTATAATCATTGTCCATGTAAAAGTCCCTCACAATCT
CTGCAGAGAAACCCTCGAAGACCGTGACACTTAGGTACTTCATAGGACCACCGCCATCCTAATA
ATAGAGCCAAAAGGATACTCAGTAATCAGAATAATAAAAGACTAAAAAGACACTTTTGAAAGTA
AGTTACTACTTTGGGTTTGCAGCGTTTAGCAGAGTATGAAATGCGATCGTTGCTTTTGTGAATA
ACATGTTCCCATATCTCCGTGGAATCATTTGTTTCCTCCTCCAAATTCTCGATCAGAAATTTCA
AATCTTCATCAGAGACTAGTTTGGATATC
Conservation Information
Conserved circRNAs NA
PMCS 0.284813529
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress
Other Information
References Chu et al., 2017;Zhang et al., 2019