Detail information of Csa1G087430_circ_g.3


General Information
CircRNA Name Csa1G087430_circ_g.3
ID in PlantcircBase csa_circ_000270
Alias Chr1:8274603_8279012
Organism Cucumis sativus
Position chrChr1: 8274603-8279012  JBrowse»
Reference genome Cucumis sativus v1.5
Type   ue-circRNA
Identification method CIRI2
Parent gene Csa1G087430
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Csa1G087430.1:7
Csa1G087430.2:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCAATACTTTCTGCATGTGTTTTGAACTCTCATGGCTAACCATACGGGCTACAAGACCCTCAA
GAATTTCACCCTGCACTTTTATATGATCTTTTGATCctcaagtaataggccttgtatgcaactg
caccttctttgaagagaattgataagccattacgaatcaagaaagtccgcagctaagaaagaaa
tataaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAAGTAATAGGCCTTGTATGCAACTGCACCTTCTTTGAAGAGAATTGATAAGCCATTACGAA
TCAAGAAAGTCCGCAGCTAAGAAAGAAATATAAATAGTTCAGACTATTTAATTAAGCAACTTGT
TAATAGCAATCACAAAAAAAAGTACAAATATACCTAAACAATTCATTTTTTATTCAGTTTCCAC
ATTCACCGAATTCCAACCTAGTTATCAGTATCATCTCTTTTCTAGGTGACCAGTGAGATAGATA
ATGCACTAGAGATTGCTTTCCCGCCTGCACTAGTGGTCTATCCTTCTTTTAGCTATCCTGCTAA
CCCCAACATGCGATGCTCTGAAACTTGTTGATTTAATATCTCAGATTTTAGACCTAATGATTCT
TGATTAAATCAAAGAGCGTGACCGCTATACACAACTAAAAATTAGGATTACTACATCAATCATT
TAGGGTTTTAAAAACTAAAAAATGGAAGGCTTATGACGTTTACACCATGACCAATACCTATTGA
ACCGTAAATTGGTTTTTCACAAAGGTGGAAGGGGAGCAATATTGTGAACGACAAAACTTGCCCA
ACATGAAACGAACATGGAAGGAACAAAAGAAAGAAAAAACCTACAAGAAAGTCCTGCTCTTGTA
TGGGGTAAACTACTTCCTTCTTATACTTTTAAGATAACTTAAACTATACAAATTAAAGCAAAAT
TACCTTATATGTAAGAAATTTCAGTTTTATCATCAGATTGGAATCTTCATCGGCAAATCCATCT
CTTCCTAAGGTCCCATTGCCTTCAGTGTCCATCAAATTGCTTTTACTTTTCACTAATTCAGCAG
CCTTGTCCTTATTTTCTTTGAATAAATTGATGTCAACAAAAAAGCCTGCGAACACATGAAACTG
TGAGCAAAAAGTCTTATATACAGTTCAGAACAGTCGAAGATCTCAATACAGGCTAGCTTCTTTT
CTCTTTCTTTTTTATTTTCATTTTATTTCTTCTTAAAGAAACAATTTTTTACTAAAGAGGATGA
AAATGTTACAATATTGAGGCTAACTTGGAGAGTTTACAAAGTGCAAATGAGGAAAGAGGAAATT
GGGAAAGACATGTGACAGACTAAGTAAAAAAATATAAATTAATCCCTATATACATCATAAATTT
TATCCTATTACTTTTTTGTAAAATAGAAAATTTTCTTTGATAGAATGAAATAAGGGGCAGAACG
CAAACACCCAAAGGTGATTATAGAAAAAGATGCCAATGAGAGACAAGATACGACAGACTTGAAA
GCTTAAAAGGGTTCTAATTTCTGCACCAGCACAACGCAGTAAAACCAACTCCATAAAGAAGTCA
AAACTATAAAATTTTATTCTGTTACTTCTTCCACCAAAAATCAGTCCAACTATAGACTCCACTC
ACATGTACATTATCAAACTCCTCATGTACTAAGAAACTTGTCTCAATAGTCCTATCTCCTTATC
CATGATTCCCTATGACGAGCGACCGAACGCCTAAAAAAAGTCATTCCAAACAGTTCTCACAAAC
TCACAACTCCAAAGAATGTGCTTCAAGTAAAAAGTCATTCCAAACGGTTCTCACAAACTCACAA
CTCAAAAGAATGTGCTTCAAGTTTTCCTCTGCATTCCGACTGAGAATGCAGCAAAACTTGAAGG
CTACAAGTTTCTCCCTTGTCTAAAGACAACCCCCTCATTGGGATTGGGAAAAGACACCCTGACA
TCCTTTCTCCCATGTCTAAAGAGTAAAGACAACCCCCTCAAGCAAGACCAAATGAGAGGTCACA
TCCCTCGCCTTCCTATTCTTCCTCTTAAAGCGAAGATGATTAAGATAAACTAAAGTAAAACTAC
TCTTCCATAAATATGGTGTGGAGAAAATCATAGAAAATTTGAAGACAAACTCCCAGCTCAAATT
GTGCTGATTTGATTAAATTTAAATCCTAGATAGAGTTCTCTAACCTCTATTTATGTTGATTAGT
CTTGCAATGATATTTATGAAAGAATTGTAAATAAAAATTAAATATAGTGTTTCATTTTTTTTAA
AGGGATATGAGCCTAGATTAATATAAACTCATTTTACTTTTGTTAAGATAAAATATGTATAATG
TAATATAAATCATATGACTTTGTAAAATATTGATCCTACATAATTTATAACCAAAAAACATGTA
TTCATTAAATTAATAAATAATATTTGAGATTTAATTTAATATTTAGTAAGAAAAAAAAGCTATT
TTTATGGTCTATAAATATATTTTGAAACACATTTTGAACAATTGTTCAAATTGAAATCCAATTT
TGAATTTGCTACTGAACACATCCATTACTGGAAACATGAAATACAACTTGTCCCTTGTTTTCAA
ATTCATGTTACCAAATCATAAATCGAGCTAAATCTAAGCTTTCAAGATTGTGTCAAATAATTCT
CTAAGCCTTTGAATTTGGACTGAATAGGTATCTAAAGTTCAAGAAGTTTAAAGGTGTCTATTAG
ATCTCTGGACTTAACAATTTTGTAGTTTTGTCAAACTTGTCTCTGACATATTTGAAAATTTTGA
AACTTGTGGACTTCCTGGACACAAAATTCACAAACCATAACCATTCGAATTTGTTTTTAATAGA
TTCGTGACTTGTACAATTCCAAGTCTGATAGAGACCTATTATTAATTGATACAAAATTGAAAAT
TTAAAATCTTAGTAGAATTTTTCAAAGTTCAAGAAGTTATAACTATAAGGCACATAACCCTAAA
AGTTCAAAAGACTACACTTGTAAATTAGCCCTATTTAAATTGCTCTACGTTTCTTATTTTTCTT
TTGCCCACCACCAGTAGGCTTTCTCTTCTTGATCTTATTAGACACATTTGTACCATTAATGAAA
TTTTCGTTTGGGTTCAATTTTTCCCCTGTAAAGCACAATATCAACTAATAATAAACATAACAAA
CCGGAGTAAAACATTGGATTTAGGGATCATGATCATCATCTACAGAGGAATGAAGAGAATGCCT
AATATATTTTGAATCAGAGTAGTTGAAATCTAAAGATAACAGAATTCACATTAAAGTTGGCTAT
TACCTCGATATAGTGGCCACAAACTTGGCTTGTGCCTGAAACATGTTCATCACATTTGGCACAG
TTAATAAAATTATGACAGTGGCTCAAATACCAACAGAAACATATATTTTGAACACTGGAAATAA
AAACAGAGTGCAAGTACCGAGCAGTACCTCAATTCTTTTTGATATCGCCGAAAAGCAGAGTCAC
TGTGAACATGAATGACCATTTTATAGAAAAGGTTGTCATTTGATATGGAAGCAACTTTGTGGAA
ATTATGATAGCATTTGAAGGCAGCTGGAAGGCGTCTTTCTCTCATTAGACGAATCATTTCCTGA
AAAGATTAGATGTACTTCATGATCAATTCATTTGGAGGAGAGTGAAAGATGCTAACAAAAGAGG
TAGCAAGTCCAAATGAATAACTTATAAAAACAGAGGAGGAAATGGTGTTTCATTTCCACCAAAA
ACAATGAGTCAGAAGCAATTTCAATATAACCAACACATGATAAAGTGATAGGGAAAACAGTTCT
GAAACGATCTTGAGTAGATAAAGCAACACTTGTATTAAGAGAAAACACGAATACAGATAAAAGT
TCATTTTCCTAACATGACGCGACAACTAACCTGTAATTTGGAGGTCGAAAAATCAGCCGGGTTG
GCTTGTAAGAATTTTGATAAAACAGATCTGTCTGCATTTCTTGAGTGGGAATCACCGTACCAGT
CAGAGTGGTCAGGGCAAAAGGCGGTACCAACGTTTTGAAGAAGTGCTTTTATTTGCTGCAATTG
TATTTTACAGAAGCAAAGACAAGAGTAAAAAAATGATAGCTAACAGGTGAAAATCATTCCATTT
TTTTTAGATAAGAAACATTTCATTGAATAAATGAAATAGAGGAAGATCCCGAGCACCTAAAGGT
GATTACAGAATGATTTCCAATTGGAAACTAAATAAGAAAGACTCAAGCCAATTTTGTTCCATTG
CAAAGAAAATCATTCCATTTCTGTTCCAATAAGACACAAAGTGAAAAACCAACAAACCAAACCA
TTGTATTTCATGCCAAGGAATTTTGTTACCTGTTTCTCATCTGACCTATTTGCAGCACAAATTT
CCCTTAGGCTTGGTCCTAAATCAAGTCCACCTAAGACAAAACAGGGTATAAAACAATAAATGAA
GGTTGCCAATAGAAAAGAATCAAAAAAATAAAAACAGCGGTGGCAAAACCATACCTCCTTCGTT
GTCTGGCAGAGCAGGAAATTCTTCCAATACTTTCTGCATGTGTTTTGAACTCTCATGGCTAACC
ATACGGGCTACAAGACCCTCAAGAATTTCACCCTGCACTTTTATATGATCTTTTGATC
Conservation Information
Conserved circRNAs NA
PMCS 0.094988628
Functional Information
Coding potential Y
Potential coding position 8278958-8278984(-)
Potential amino acid sequence MVSHESSKHMQKVLEEFPALPDNEGGGLDLGPSLREICAANRSDEKQQIKALLQNVGTAFCPDH
SDWYGDSHSRNADRSVLSKFLQANPADFSTSKLQEMIRLMRERRLPAAFKCYHNFHKVASISND
NLFYKMVIHVHSDSAFRRYQKELRHKPSLWPLYRGFFVDINLFKENKDKAAELVKSKSNLMDTE
GNGTLGRDGFADEDSNLMIKLKFLTYKLRTFLIRNGLSILFKEGAVAYKAYYLRIKRSYKSAG*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019