Detail information of BGIOSGA027752_circ_g.4


General Information
CircRNA Name BGIOSGA027752_circ_g.4
ID in PlantcircBase osi_circ_007497
Alias 8:1049144|1049518
Organism Oryza sativa ssp. indica
Position chr8: 1049144-1049518  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA027752
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA027752-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTATAATTATGTTAAAGCAACAAGTCAAGTGATATTTTTACATTACAGTGTTAACAAAAAAAAA
GTAAATGGGGGAGAATTTACTTTAGTTTGGAGAGAAtgcttgttgttgaaggcaggccagacat
gcacattacaaaagtatgaactccccaaagtgaatctgatctgcaatgctggcttacaggcatc
taccggat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGCTTGTTGTTGAAGGCAGGCCAGACATGCACATTACAAAAGTATGAACTCCCCAAAGTGAATC
TGATCTGCAATGCTGGCTTACAGGCATCTACCGGATCCACATCAACAAACATATAAGGAAATTT
GGAACATAAGATTTATGAAAACATTATTTATAATTAGTCCATACCATAATAAGCTCTTCCGTTC
CACAATTTCGTGATGGTAGCCTGACAACAAAGTGGTGAATCCTTAAATCCCAAAGAAGCTTTTT
TCGGTTTGCAGACGTATACCTATAATTATGTTAAAGCAACAAGTCAAGTGATATTTTTACATTA
CAGTGTTAACAAAAAAAAAGTAAATGGGGGAGAATTTACTTTAGTTTGGAGAGAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021