Detail information of BGIOSGA027200_circ_igg.1


General Information
CircRNA Name BGIOSGA027200_circ_igg.1
ID in PlantcircBase osi_circ_000976
Alias NA
Organism Oryza sativa ssp. indica
Position chr8: 15017137-15021489  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method DCC
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA027200_circ_igg.2 BGIOSGA027200_circ_igg.3
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   AA-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAAGTAAACAATAACTACAATTTTACTATGCTAACAGTATCTTGATGGATTAAACAACAAGAA
TTAGTTACCTGTAATATTATCATCTCTTGGAACATCacttcaattgagtttgttcaaaagagaa
gtcgcagaatgtgcccattgtgcagttcatcgatagttgtgtgttttacgactatgctgtacag
cttccaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTTCAATTGAGTTTGTTCAAAAGAGAAGTCGCAGAATGTGCCCATTGTGCAGTTCATCGATAG
TTGTGTGTTTTACGACTATGCTGTACAGCTTCCAAGTACAAGAGCTTAGCACCGACATGACACA
ATTTTATTTGGCAGACCTGCATCTGGGCATAAGCAACGGATAAATTCAGAAATAAGCATTGAGG
CTGAACGGTTGATATAGTATGAAACACGTTGTTATGAAATGGATTTCTCACCATGCAGTGATCC
AGTGCAACTGAAGTTGCATTGATACTAGCAAACGCACTGATCCTAGTCCCCTTCACTTTATAAG
GATGCATCTGATTGGTGAACCTTCAGCACCCCGCAGCCGAAGTGGCAGGCAGTGCAAGGAGTAT
ATCCCAGGCATGATATTTTCCAGTTTGAGGCCCTCGACAAGAATGATATCCTGAAAAACAAAAT
AGAATATATTACGTCGATCATACCCGTAGGGTAACATTCACATTCCATACGGCAGAATATGAGC
TGCAACACTCATAAGCACATCAGCTTCTTGGAAAAACATGGTACTCCTAATTAAGTTGATACCA
GATTGTGGGTATTCCTGCTACCAAACTTTTTTTCTTGTCATTCCATATATCTAGAGGTGCTCAC
TTGTGTTATATGCACACTGGAGTCTGGTGATTTATCCGCATCTTGCAAGTGTATGGACAAGTTT
GACTCTGCCATATGGCACATATCAGTTTGTGTAATATATCGTGCTGTGCCAACAGTGCCTCACT
TTTTCTTTTGGGCAGAGTGCCACACATAAATTAGTCTTCGTAGAAAAAAAATGGCACAACAAAT
TTCAGGAGTGACTACTGGTATCCTTGGATACTTTGATATATCATACCGAATTGTCAATCAACTT
TTTCAACTTTACATTGTTCAGTTTAGAAATTAATGTCATCAGGAAGCCTAACAGGATATTAGCA
CATTGAATTCAACATAGCCAAGCTAGGAAGAATAAGAAAATTTTAGGTGAGGACAATATATATC
AACACTCAACTATTTCTTAACTACATCGCATTCCTATCAGATTTCTATTGGAAGCTGGATGTTG
TAAGTGACCGAGTATAGGAAATACAGGATAGGCAAGATAAAGTTCAGAACATCAGAACAAACGT
AAGATGAATAACAAAGATAAAAGAGCCATAAATATTCTGAAAGTGAATGTGAACATAACAAAAT
TACTCCAGGAAACATGTCCATACCCTGTTTTTGAGAAGAACTAAATGTGACGGGATCAAGTCAT
CAAAAGCTGCAACAGACAAATAGTCTATTCCTGAAAATGACAACAGAAATGAGAAATTACAGAA
CAATAACTGTAGTGTAGGGCACCACACCACCACGATAAAAATATTACCTCTAGAGCACTATCGT
CCAAGGTTAAATAAACAAGAATACAGAAGTTTGCCCTGATAGTACATATAAAGTGAATGAAAGA
ACTAAAAAACAAAAAAAAGGAGCATTATCTACCAAAAAGTGTCAAAACAGACCATGACATTTCC
TACTTGACTTTAATTACCATGCTTTCAATCTTATTCATTTGCATCACTACTTGATTAAATAGGA
CCTTAAGTGGAGGGTCACAAGTCAAGAAAAATATTTTGTTCCTAAGTAATTTTTTTCTCTGGTT
TTTCAGCATTGATTCATAGAAAAATGTGTATTAGTTAGCATGTCATGTATGCTCCAGACACTAT
TATTTGAAAAAAAATCATTCAATATTAAAAAAAAGAAAAAGCTGACCCAGGGTACTCAGAAACT
TATTAGTTTTGGCCCATGTTTTTTATATACAAGTACATAATAATTCTGGATTTTCACAGGAGCT
AATGCTATGTCGCATGGAGTATACACAGCATGCAGTACCCCATCCCCCAGGCAACCATACTAGA
TCAGTATACCATTTCCATAGGTGTTATATGTTTCAAGACCTATCTCGTGACACAAACTTAAACC
TGCAAACGTGCTATTCAATATTAATATCATCCTTGAACAGAAGGTCAGCTGATGTCTGCTTCTG
CCTGAGACACACAATATCCTGAAAGATGAGTTCAAGTATACTAGTATGAAATAACACACAAAAA
CTCTTTGAAGTCCCTTAAGGTCATGATTTCTGAAGATCATCACATTAGAAGTGCAAATTTGCAC
AATTACATTGCTCAAACAGGAAGACATGTAAGATGGGGATGCACACTTGTGAAACATGAGAAGA
GGCTTCTAGCTAAATGCTTATTCATCGGACCAAACTAGACATTGAGATGATTATCAAGGGAGGG
TAAGTCCGTAAGTACAAGAAACAATAATATGTTTTTGGAAGGAAGACACTGTAATTTTAATCTA
ATATGATAAATGGTACCCAAAAAAAAAAAACAGGAATAGACTAGTGATTTTCACAAAGTAGACC
TTTCGGAAAACATTTTTTTACAAATGGACCCCTAGAAAAAACTTTTTACAGAAATAGAACCCTT
CCAAATGGTGCTATGACATTTGGTGCCGTCTGTTCATAACACGATGCTGCAGGATTGAACAACA
TGTAGGCTGGCATGTAAAATGGCCAGTGGAGCCACTAAGGGTGTGTTTGGTTCACGGTCATGCA
TGGATAGGATATAGCCATCCATATTTTGTTGGATATGGTGATCCAATTTTTTGTTTGGTTTGTA
TGGATATGGCGATCCAATTTCTTGTTTGGTTGGAGGGATATAGCATGGATGGGAAAAACCAAAA
GTTAGTGGGACCCATTTGTCATATATATTTTTTTATCAAAATATAATCATCTGAGATCTTGTTT
TAAAGATTTAATTATAACAAATATAATGGTGTAATCAAATCATAAATTAGATAAACAGTTTACG
AGAAAAAATCATTTGGAGCTTGCTTAACACGAAATCAAACCAACCACAGCAAATCAGAACAGGA
CACATCACCCAGTCCAAAACTGGATGGCTTCATCCAGCCAAATCGGCCATATGCACTCATCCAG
CATATTGAGGGAATATTCCCTATTCCGGGCCGCCCCATCCATCATGCCCTCCAACCAAACACCA
CAAAAACTCGGGCGGCCATCTCCCATCCAGTCTCATACGCCCAACCAAACACACCATAAGGTTC
CACGCAACATCCATACAGAAACCTACACGATGCCAAATCTTGCTATGTTGTGCTATGTACACAC
AGCGCCAAATGTCACTTCTCTCTGCTTAGGGTCCATTTTTAGCAAAAGTCTCACTTGGAGATAT
ATTTGTAAAAACAAAAAGTTGCAAAGCAAACCATGCCAAAACAATAATCATTTGCATGAGCAAG
CTTAAGATAAGAGTCAATTGTACGGATAGTTGCATACGCTAAATAATATAAGAGTCGGTTACAA
ATATAGTGAAGGAACCTCAAAAGGATGCATTGCTACTTCAAACTCACCGACAAGTTTAATATCT
GTGTTGTCTACCAACCATTGTGCGCCATCCTCCATAAAACCCACATAACTAGTGTCAAATTCTT
TCTTCCACATTAGTTGCCTGCAAGATGACAGCTTTACTAAGTGCGGTATTTCAGGAAATTCCAT
AATAGATAGATTATAAGAATACGCAATAAAACTATCCGTAGACTACGGATGCACAAAATACACA
ATTAGGAAGAAATAGGGTAAACAGCAGCGCATCATTTCTAAATAGATAGAGAAACACATGAAAA
GGGCATGCCGTTGCAGCAACTAAAAAAGCTCCACGCACTTTGGGTTTTCATATAGAAACCAAAA
GGTGGTGATTTTGGCTAGTGGCTCTAGTAGCATAATGAGCTCAATTAATCATGATGTTAAAATA
TCTGAGAAAACAAGAGTGAGTAAACTAAATGTAAATGCAAGGAGTATACAGTAGGACCCACTGC
CAACAGATTTAACAATCAATGGGGTGGATCTCAGAAGGAAATATAGAGGGTCGGTAGACATAGA
TTAAGGAAGAGAGAAAGAATGCCTTTACCATGCTGAACAGATAAAGCAGAAGATTTTGAACTAT
ATGTGTGCTCGTATATATAATGGATTCTTTTTTGGCATAACAGTTAACTAGGCATGCTTACCAC
AAATGAGCATATAACTATGCTGAGTCCATTACCTGTCAGTATTTAGTGTTCTAAATAGCACTCG
TTGAATTCCTTTAGGAATATGTAATGATTCCATCATTTTAGCTGCATCGAGTACAATAAATTCA
ATAGTTAGGTTTGACTAACACATGCTGAGATAAGTAAACAATAACTACAATTTTACTATGCTAA
CAGTATCTTGATGGATTAAACAACAAGAATTAGTTACCTGTAATATTATCATCTCTTGGAACAT
C
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019