Detail information of 2_circ_ag.2


General Information
CircRNA Name 2_circ_ag.2
ID in PlantcircBase ath_circ_018745
Alias NA
Organism Arabidpsis thaliana
Position chr2: 19209860-19213981  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 2_circ_ag.3 AT2G46750_circ_g.1
Support reads 89
Tissues root, seed, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTTGGTCAAACCGTATGATGTAGCAAACAGTGTAGACGTAATTAATGTGGCTCCCGCACACT
TCCCATTCGCATCTCTGAACCTCTCTTGCGTCTCCTctgatgttcgtatgatggctattgccgc
agagagttgtgaacggaatggcaagaaatcgaacaaaccattgcccgatgtgttgaccgctact
cggtcatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 385
Transcript exons: 19209860-19210117,19210218-19210296,19213934-19213981
CTGATGTTCGTATGATGGCTATTGCCGCAGAGAGTTGTGAACGGAATGGCAAGAAATCGAACAA
ACCATTGCCCGATGTGTTGACCGCTACTCGGTCATCTCTTCGATACACCACTTTTCCTTGGCTT
GGTAACCATATGAAATCCGCAAACTCGTGTTTCTTTCCAAAAGTAACGGCTTGATCTTCAAAAT
CCGAATCGTTTCTCATAGTATATGTCAGCGATCTCTTGAACATCGGTTGCAATTCAAAAGTTAC
CTACCTGAGAGATAACGCCAAGGACGCCAAGAGAAACCTTAGCCGCGTTAAACTCGTTAGGAGT
CGTAGTCTCGCTTAAAACTCCCGCACACTTCCCATTCGCATCTCTGAACCTCTCTTGCGTCTCC
T

Genomic sequence CTGATGTTCGTATGATGGCTATTGCCGCAGAGAGTTGTGAACGGAATGGCAAGAAATCGAACAA
ACCATTGCCCGATGTGTTGACCGCTACTCGGTCATCTCTTCGATACACCACTTTTCCTTGGCTT
GGTAACCATATGAAATCCGCAAACTCGTGTTTCTTTCCAAAAGTAACGGCTTGATCTTCAAAAT
CCGAATCGTTTCTCATAGTATATGTCAGCGATCTCTTGAACATCGGTTGCAATTCAAAAGTTAC
CTTTAAAAAAACAAAAACAAAATGTAAACATCTAAAGAAAATGGCCTAGAAATATGATATAGCT
TTGTAGTAAAAACTGAAACTGAAATTTTAAGTTTTCTAACCTGAGAGATAACGCCAAGGACGCC
AAGAGAAACCTTAGCCGCGTTAAACTCGTTAGGAGTCGTAGTCTCGCTTAAAATTCTAATCTTT
GCAAACCCTTCGTTGACCGAACCAGGACTAACCATCCTGATCTCGGTCACATAATCATGGACTG
CACTTCCTTTACCCCACAATGAGCTCCCGTGAGCACCGGTTCCCATCATACCACCAACGGTCAG
CCCCCACCAATACGGTGCATAAGGTAACGCCAATCCAACTTTAGCCGCTTCAACGATTAACTGC
CTAAGCGTCATGCCACTCTCAACCGTCATGGTCATGGCTGTTGCATCGGCTTGTACCGTATGGT
TTAGAAACTTTGTGCTTATGAACAAACCTTCGGTTCCGTCGGTACACACGAGCTTAGTAATGCT
ATGGGAATATCGAGTTGTTACACGCATTTTCCGTCCGGCTTGAGTGGCTGCAGCCACGACAGAG
ACAAGCTCGGCTTCAGTTTTTGGGTATGCCACGTTGGCGGCTCGACATGTGGACCTGTCTGGGA
AGGCTCCGTATGAGTTAGTGACTGTACAGTTCGTGTTTCCTGACACACATTTGACAGGATCATC
GGGTGGTGTTGAGACAGCCGTGTGCATAAGTGTAAATATATAATATAACCCGACTAGCGTGCGA
TACGAAGGAGGAAAAGTAAATGCCATGGGGTTTGATTCAGTTTTGTTGAATCTTAATTTGTTGT
GATTTGTGAATGTCGGCTTTGTAAATATATTTGGTATATATAGATATTGTGTGGCGTTAAGGCG
GGTTCAATAGTATTTAAATAAAATATTATGTTTAGTTAAATCAAAAGAGGTTGAGATGAGATGG
TTCATGCAATCTTGTACGTAAGAGAGTATTAACCACTAATTAATCATATTCGATTATTTTATAA
TATTCCATTCATTTTTATGGACTGTCTTCTTAATTTCATTTCTATTACGTTGTCTTAAAAGACT
TGACCATATTCTTATCAAGTATCATAGTCTATGGCAATCTCATTAGTCTTTAATCAAAAAAAAA
ATATTCTTGTTTAGTCAAATTATTCACCCGGTGATTTTATGAAAATTGAAAAAACCAACGATGA
CTTAGATATTTTAGTGAGCTAATACATGTACACGATAATTTCAACTACTGTAGTAGCATTATAT
TAATAACTCAAGTCTGTAATGTCTTGAATTCATATATTAAGCTATATATGGCCTTGAATGTTTG
TACGTAGTTTTTGAACTAATTTTTAGTTTTAGTTTTTTTTCCAAAATTTATTTTATAGTCATTC
AAGATTTAAATTGAAAACAATTTATTAATCTAAGAAATAAAAAACTAGTTTTTCAGTGTTTAAC
TATTTTTCAAAGAAAAACTAAAATCTGTAATTTTTAGGACTTGGGATTTTTCCTCAAAAATCAT
CAATCATATTTTTTATTTCTTTTTTTCTAACGAAAATATAATCCATTAACATAAAAATCAAAAA
CTAAATAAAGTAGGACACCCAACAAACTACCATTCAAATTTTTAAGAAAAAAAATAATCTAAAA
CTAAAAAATAAAAACCAAAAGCCAGAAAACTATTTTAAAATTATAGACATTCATGGCCTATATA
CTACACCCACTAGTTGAGTTTTATTATAATAAAAAAACATTAGTTGTGGTTTTGTCCAATATAC
AGTGAATAATCAATTTTATTTGAAAGAAGATAAGATCGCCAAGGTACGCACGCCTTTCACAAGC
CGTTGCCTTCACACACAAAGTAAATGATTCAATGAAAGTCCATGGGAGTAATCTTAGTAAATGA
AAGTCCATGGGAGTAATCTTAATAAATGAAAGTCAGTACTAGTCATAGTTCAAACTTTTCTCCA
AATTTTTTGATAAATCCTACAGAATATATATTACTGCATTGTGTAATGATATGTAATCTTCAAA
TACATATAATGGTAGCACTAATCTGAAACATAATCTAATGAATTTAAAATCCTATTTAATTTCT
AATACAAAAATAAAGTTTTAATAGAAATAGTGTTTGTAAGAAAATAAATATCAGATATTGAAGA
AAAAAACTAGTCTTCCTTTTTTTTTTTTGTTAAAGGGTTTTAAACTATTCTTCCTTGCACACAC
ATGTCAGTATCTTGAACTTTGCGAATTTTATTTCGTATTCGGTTCAAATTTTGAAGTCCACGAT
ACTCAATCCTAAAATTTTATCTTGTTATTTAAGGTATATGTATATCTCACAAGTTTTTTTTTTT
TTTTTTTTGGTTTTATATCTCTTAAGTAGTTTATTTGTCGTTTGCTAAAAAAAAAGTACGTAGT
TTATTTGTCCTCAATTATTAACATCATTATTGTTTTCGCAACAAAGGGTCTTATTTAAAAAAAA
AAAAAAAAAAAACAAAGGGTCTTATTTGTAGCGCAAGGCAGAAAATGACCTAATTAATGATTTA
TGAACATGCGCATTTGGTAAAATAAATAATAAACCCATAACCCTCACTCCTCAGTGGAACAAGT
TTCAAGATACGACACCTTAAAATGTACTTTGACTTTGATTTTTTTTCTTTCTAATTCCTTTTCA
TTAGTCAAAAGTAGAAACTAACCAAGACATCGAAATTATTAGGCATCGTGCCTCACGATTTTTT
TTTTTTTTTTTTTCTGCCTCTTACATTTTTATTGCTACCACAACATTAACAATAACTCGTCATG
ATAAATATCGACCACATATAAAGAAGATAAGTATCTTATATCTAAAACAAGCAATGAAAAATTA
GTAATGAAAAAATAAAAAAGAAGCAATGAAGATTAGTAACTTAGTGATTGAATCACACTTATGT
CATCAGCACGTGTACATACCCTAGCTTCTTTGTAGACTTTTCCTGGTCGACAAAAATATCCTTT
GGTCGGAGCACAATGAGCATCCTCCGAACATACGCACAAACCCTCTAATGCGCATCCATCTTTT
ATTATCGTCACATTTCCTTTGATTCCTAAGATCTGATCAGTCCATTCGCTTGAGAATAAACCCA
TTGGATCATAGCTTTCTTTTACTTTCAAGAATGCCGGCACATTCTTGTACTTTTTAATCACTCC
ATCAAACGCTAAGTTCCTGTTCTTACCCCAATGCGGCAAGGCGTTATACTTGAACAACGCAATT
TGCTCGATTTCTTCGATAAAATCTTCGTATAGTCGCGGTGATAACGGATCTTTGGCTCGGTAAT
ACGTGAGGTCAAAGTCCAAAGCCTCTGTTTCTTTCCCGAGATACGCCGGAGAAGATGTGACATA
ACGCATTAGAATACCATCGTATAGCTCAAGCACGCACAAAGATTTCGACTCTATCTTGACAAGA
GATTTGATGTCGTTGATGAAACTTTTGACTTGCGTGAGCGGAATACTGAAAGTTGTTTGGTGGA
AGAATTCACTTTTTATACGTGAGTCCCATGGACACGCTGTGATTAATCCATCATGAAGACTGTC
TAGGCATGATCCTGACGACATCATACGGTTCTGGCTTCCAATAACCGGATAACCGGTAAATATC
ATGCCTAAAGCCGGTGAATGTTTAAACCATAATAAAGGTAGGAGTGACTTAATATTCGATCGAT
GTAAAATGATGCAAATGTACAAGTAAAAATAAACAAAAGTTTAGTTAAATACCATTGTTGGTCA
AACCGTATGATGTAGCAAACAGTGTAGACGTAATTAATGTGGCTCCCGCACACTTCCCATTCGC
ATCTCTGAACCTCTCTTGCGTCTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.391008842
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017