Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d011929_circ_g.1 |
ID in PlantcircBase | zma_circ_009774 |
Alias | zma_circ_0002889 |
Organism | Zea mays |
Position | chr8: 164793470-164801169 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d011929 |
Parent gene annotation |
Heparan-alpha-glucosaminide N-acetyltransferase |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d011929_T002:5 Zm00001d011929_T001:3 Zm00001d011929_T003:4 Zm00001d011929_T004:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.096440653 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
164793474-164801166(+) 164801155-164794328(+) 164793824-164801105(-) |
Potential amino acid sequence |
MILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAVPLALKRIPDRGRAVRRVVVRTLKL LFWGILLQGGYSHAPDELAYGVDMRHVRWGGILQRIALAYLVVAVLEMVTKDGAKVHQDQPPGS SGRFSRVFRMYLSQWIVACCILVVYLSLAYGVYVPDWEFRVRNADSPDYGKVLTVRCGTRGALD PPCNAVGYIDRRVLGINHMYQKPAWRRHRLMILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLF IVGMAVPLALKRIPDRGRAVRRVVVRTLKLLFWGILLQGGYSHAPDELAYGVDMRHVRWGGILQ RIALAYLVVAVLEMVTKDGAKVHQDQPPGSSGRFSRVFRMYLSQWIVACCILVVYLSLAYGVYV PDWEFRVRNADSPDYGKVLTVRCGTRGALDPPCNAVGYIDRRVLGINHMYQKPAWRRHRLMILV DGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAVPLALKRIPDRGRAVRRVVVRTLKLLFWG ILLQGGYSHAPDELAYGVDMRHVRWGGILQRIALAYLVVAVLEMVTKDGAKVHQDQPPGSSGRF SRVFRMYLSQWIVACCILVVYLSLAYGVYVPDWEFRVRNADSPDYGKVLTVRCGTRGALDPPCN AVGYIDRRVLGINHMYQKPAWRRHRLMILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGM AVPLALKRIPDRGRAVRRVVVRTLKLLFWGILLQGGYSHAPDELAYGVDMRHVRWGGILQRIAL AYLVVAVLEMVTKDGAKVHQDQPPGSSGRFSRVFRMYLSQWIVACCILVVYLSLAYGVYVPDWE FRVRNADSPDYGKVLTVRCGTRGALDPPCNAVGYIDRRVLGINHMYQKPAWRRHR(+) MEKAQADDTGGRRRRRVAGHRARAVERLQPRGLRDALLPLHRRHGRSPGPQEDPGPWPSREESG RKDAEAALLGHPVARRLLPRSGRTGVWSRHEAREVGRNPPEDRSCVPGGCGSRDGDERRRQGSS GPAARFFRPLLPCIQNVSLPVDRRVLHSGGLPVPCLRGLRS*(+) MPQKSSFSVLTTTLLTARPRSGILLRARGTAMPTMKRKKGITKSARLQPFHGACPMTGHSPPAP STSIISLCLLHAGFWYMWLMPRTLRSM*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |