Detail information of BGIOSGA034996_circ_ag.1


General Information
CircRNA Name BGIOSGA034996_circ_ag.1
ID in PlantcircBase osi_circ_003061
Alias 11:4995967|4998252
Organism Oryza sativa ssp. indica
Position chr11: 4995967-4998252  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034996_circ_igg.1 BGIOSGA034996_circ_igg.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCTTTGCATTTGATTTCAACTATTTGAAGATGGCTAGCTGCAAATGATTGTTCCAATTGACT
GTAACTTCCCTCGGTTTCCACTAAATTGTTGGGTACcttatttaacaacttctgtcctgattaa
gctgcactgtcagttgtgatcttataatgcctttcattcctgtagatattgtctctctagccct
gaaagggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATTTAACAACTTCTGTCCTGATTAAGCTGCACTGTCAGTTGTGATCTTATAATGCCTTTCA
TTCCTGTAGATATTGTCTCTCTAGCCCTGAAAGGGTCACAGTTCTCCACTTATGTTATGTATCA
CTGAAATAAACTAGTGCACCTTCACTGAAAGTAACTTCTGTGTCTTAATACCACCCTTTTCCTG
CTAATTTTCTCTTCAAATAAAGAAAAAAGATTAGTGAATTTTCCATTATTTCGAGATTTGAAAT
TTAGGATGTATCTAATATAAGTCATGGTAGACAGAATTATTAGCAATAGCAAATGATAGGAATT
GTCAAAGCACTATACTCCAGTTTCTTACCAAGTCATTGTTTGCCATTTCTCTCATGTAGGTAGG
TGTCAGTGGTGCTTTCACGGATTCGACTCTTCGGCAGTATTGAAAAGATTTGTGCCTTTCGATG
GATCCAATCATACCATTTCTCTCATTTTTTGGTGTAAACCTGTAAAATGTGAAGATGACTTCTA
TGCATATAAAGTAATCTAGTGTACATTATGCCAAGATCTAATTATCATCTGAATCTGGTGTAAC
TGATAATTTCTGGCATAGTTGTTGATGCACCATCGCTTAATCTGGTGTAATTGGTAATTTAAGG
GCAGTTGTGAGTAGAAGTTTCTGTGATGCTCCTGCATTCAAATACTAACATTCACAGTTTCTAT
GATCCTCGAATGATACTAAAAACTGATGGAAGAGATTTTTCTGTGTATCTGTGAGCGTCTGTAA
AATTATCGTACGCACTTCCTGCACGGTGACCAATCGAACCAAGTCCAATTCACAGACCCACCCC
CCCCCCCCCCCCCCCCCGAAAAAAAAAAGTAATAGTAGTAGCAATAATAATAATACAGCAGAGC
AAAAAATCTAATTCAACTCGCAAATCCCTACATAAAGACAGACAACAATTCGGATCCATTTCAA
CTCACAAATGCAGAATCCATTGCTAATCGACAATATCATGTACACACATGATCCATTTCTAATC
AATACTTTCTATACAAGTGTAACCACAAGCAAGCTTCACGTTTAGCCACGTCAATCGATGGGTC
TTTATAGTCGTTAGATGAAAGTCCACTTCACTTCCCCATCACTACCATCAAAATGTTAGATTAT
CTTACCATTCCAACTATCTTCCAATCAAATTTTTATATTATACGTTCTGTTTTCCTGACAATGC
ATGTATTCAAATTATACATCACCAACTTTATCGCAATTTATCACCATTATTATTGCATATTTGC
CTTCAATTCATACATACACCTTCTAGCTCTATCATACCGTTCTACCAATTGTTTTCATCAACTC
GAATTTCAACAAAAAATTGTTTCTAGCTGCAGACATGTTCTATCAAAGGCATACTACAACCATG
AACAGCCTGGGTCTTGTTAATTCTCCGAGTCGATACCAGTACACACAAACTTAAAGCCTGTAAA
AAAACACACAGTCAACTCAGAGAGGAGAGGCCCTTTTATAGATAAATGAGAAAATTAGTTTACT
TGAAATTATCCATAGAATTTTCTTAGAACATCACCTGCCCAGCATGCAAAACCATCTAAATATT
ACAAAGTTAAAAGTATGTAATTAAAATATGATGCCAAAATATTTTGAACGCTTACTTGATAGAG
CATGTATAAATAAGTATAACAGTGGAGAAAAAACTAAATTGTATGAGATGTAGTAAATATGCAG
TGAGACAAAGCATATTCGACACACAAAAGGGCAAGCATAGCTTCACTACAGAAACAGAATTAGA
TGTTCACATTTGTTTGTATCAGCACTTGAGCAGGATCTGCATGACCACAGATTCAATCAAAATA
GGCTGAATAGGAAGATAACGCTTTTAAATGTTGATACTTGCATCAGTAAAAACATGAGAGCATT
TACAAAAGTTTCAATAGATAGTGCATGCATGATAAAAAAAAACATTTGTTAAATTCAGAAATAC
TCATTGTGTGTTTTAACTAAGTCAGAACTTATAACAATTGACTATTGACAGTACTTGGATTTAT
AACACACATTGATAACTGCATAATAAGAAACATGGGTGTTCATAAATAACTCACGTCCAGAACA
TCGAATACTAATTTTCTCTAGTGGTATGCCATTGGCATTCAAGACCTCCAAAATTTTGAGAATA
ATTCCATGAACCTCTTTGCATTTGATTTCAACTATTTGAAGATGGCTAGCTGCAAATGATTGTT
CCAATTGACTGTAACTTCCCTCGGTTTCCACTAAATTGTTGGGTAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021