Detail information of BGIOSGA016459_circ_igg.1


General Information
CircRNA Name BGIOSGA016459_circ_igg.1
ID in PlantcircBase osi_circ_014389
Alias Chr04:22241816_22253557(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19849311-19853080  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   NN-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCGTCAGATTTATCTAAAAAAAAATCTTTCCACCTCCACCTCCTTCCTCCCACACGTAACATC
ACTTTCCCTTGTATATGTAGTCACGTATAAATATACggtgcttcagtcaggctcccaggacacg
cgatatctggggcagattttgcagtactccctggatatggtcaggaaactatctgcccctgcaa
aggaagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGCTTCAGTCAGGCTCCCAGGACACGCGATATCTGGGGCAGATTTTGCAGTACTCCCTGGAT
ATGGTCAGGAAACTATCTGCCCCTGCAAAGGAAGATGACATGAAGAGGAGTCATGAGAAATTGT
TAAACGAGTTGGCTGCAAGTTCCGAAGTTAATGACAATGGTATCAGCTCCTTTGTCATTGCTGT
CATCAAGGGCCTGCGTTTCACTCTCGAAGAAATAAAGGTTTGTTCCTTGTTAACACCTTGAATT
AGTCCTGACATAGATTGCACTTACATTGCGCCGTGTTTTCCTAACATTTTTCTGTGATTAACAG
CAACTGCAAACTGAAGTTAGCAAGGCTCGCATCCAGCTCATGCAACCAATTATAAAAGGCTCTG
CCGGAGTGGAATACCTGCAGAAGGCTTTCACGGATCGCTATGGACCTCCTGCTAATGCATCAGT
GTCTCTCCCTATAACTAAGCAGTGGGTTTCGGCAACGAAGAGCATCGTGGAACAAGAGTGGAGC
TCACATTTGGAGTCTCTCCAAGCTTTGCCAGCAGATCATGTAGGTTTCTACGATCAAAACAATT
TACAGTTGTATTAGCTTAGGCAGCAGTCTAAGTTTTTCTCTGACTGACACGAATTTATCCCTTA
TTGACAGGCTCAGCACGTTGTTCCGGTACTTCGAGCTGGTCACGGTGCTCCAGCGCCGCAGGCT
TCTTCGTCTGCAGCTAGCAGTTCTGGTCTCCCAGAATGCAAGGGTGAGAAGATTGACAAGCTGA
CAAGGGTTGGCTTGTTGCAACTTATCAGCAATGTGGAGGGCCTGAACATGCAGTCAACCCCTGA
GACCTTCCAAATTAATCTGCTGAGGTTGAGGGCTGTGCAAGATCAGTTTCAGAAGGTGATAGTG
ATCGCGACGAGGTAAATAAATATCATCCCCCCCCCCAACCCCCAATACTTTGAACTAAACCGGT
CATTCAGAACAATTGATTTCTACGATAACTGAAATCAATTTACCATGTCTGTCTGTTCCAGCAT
GCTTGTCCTGCGTCAAGTTCTGATGTCGAAGATCGCTCCTCCGGAGCTACAGAATACCATCTCA
GAGCTCTACGACGCTCTCGTGAAGCTCCTCGACAACAACGCTGACGCATCAACGAGGGAGATCG
TGGAGGCGATGACGCGCTCTCTGGCCTCGGTCGGCTCTCTGCCGGAGGAACAGATTCAGGACAC
GACAGAGCTAGCAACCAAGATGCTTCTCAAGAGCCTCCAGGCCGGCGACATCGTCTTCGGTAAG
GTGTCCCGGGCGGTCTACTTTGCCTTCCGCGGCGTCGTCCTCGGTGGCGGCGCCAAGGGCAAGA
AGCTAGCCGAAGCGCCGCTGCGACGCCTCGGCACGGCGAAGCTCGCCGACAGGGTTGTCAAGGC
CGGGGAGGTGCTGATAAAGATGGCAGTCATATCAGAGAAGGTCCATGGACCATGGTACAAGGCA
CTTGCCTTGTGAAGAGCAGAATAGGGTTTGTGTTGTTTTGTGAATATACATTACGGATTACGGA
CTGTAAATTCTTGTCCTACCGGGGTGAGGTAGGAAATATTGGGCATTGTACATAAATTTATATA
GGTGTTAATTGGTAGGCTGATTTCAGTGTCAAAAATTAATTCTGGGTGCAGGGCTAATATGGAT
GACCCTCACCCCAGAATTTAGCCAGTGGTTAGATGTGCTGAATTGCACCTGGGTGTAAGTTAAA
TCTGGTGTAATCTATTTGCTCTTGGAACTGAAATAATGTGAATATTTTAATTTAAATATTGTGA
TGTAAATATTTCGATCGGTTGTGCAGTGGGGTGATTGAAATTTGGTTGGCATTCACCAGAAATC
CTCCTTTTTTGTTCTTAAGATCGTATAGGTGTGATTAACTTCTTACAGAAATATAACTTTTACA
GTATATTATACTGTGAGTATATACTTACATTATATAGAATTACATTATATAGAAGGGTATGTTA
GGAATTTGACAGAAAGTGGAAAAGAGCTTTCTACGTTTAGAATTAATCCAATCCAATAAATAAG
ATTCAGTTCGTGCGCTCGCGAAATACGACGGCACGCTAGGCGGCGGTGTGATTCGTCCCCGGCG
TCATTCCTGTGCTCGCGAGGGACGGTGGCGCGCTAGGCAGCAGTGCGACTCATTCTCTTGGCTG
TCATTCGGCCTTACTCCATGTGTTTCCATATGTTCTCTTGAAACTTATGTGTAATTGTTCATGC
AGTTGAGCACATGAAGGATGTTTAGAATATAATTAAAGATGGCACAATTTTCATATCTTCCCTT
ACAAGAAAAGGCAGTACACTTATAACAATTCGAATGTGCTTATCTTGTAATATTGCTAGTATTT
GCTTGTGAAGTGCTGAAGATTTTATAGTACTGCTTTCAGTACCATGGAATTGTTTGGTTTTATT
GTACTGAAAATTCAGTTTATCATCTTTGCTTCTTAGGTATCACATTCACCAAGTTCAGAAATCA
TGCATATCAAAAAGAAGGTTCAGAAGTATCTTCAAATATGCAGTCCTGAAGCAAATGAAGAAAA
CAAGTGTGTTTTTTTTTCACTTTTGGGAACACAAGCCAAAAGAGCAAATAGCTGAACTGTTCCG
GCATGAGCATCCGCCATCCGGTCATGATGCCTTTTCACTTAGCTCCCATCGGATGGCCTAAATA
AACCAAAAAAAGCCAAATTTTAAATTTTTAAACTTAATTTTGAGAACGATTTTGAGATATTTTC
AACGTAGTTTTTTTTTTAGCATTGGCTTTTAAGTCACCAAGAACACATATATAAAAATTTTATT
TATAAATTTATTTTTATTCCCTAATAAGCCGTTTTGGCGTATTAGAAAAAAAGCGAAACGATGA
CGCCCTTAAATTCTTCCGTCTCGAGAGGGAGAAACCTCATTAAGTACCCAGCCTGGTTGTGGCG
TTGTGCTACTTGGCCGTAGTCATACGAGAGTCGAATCAGCAATCAGATACGATCATACGAGGCC
GTTGTCGCCGCGGGGTGGAAGACAAAATCTGCCATTGAGTACACGACCCTCTGCATGCATGCTG
CTGATCTTCCTCCTTGAGCGCCGTCGCGTCCGCCGTGGCTGCTCCTCCCCTAGATAGCGCATGC
CTTGGGTTTTTTGGTGGATGGGAAGGCAAGAAGAGGAGGAGAGGAGAGCGAATCGATTCCCGTT
GGCGGCGGCGCGGTGTGGTTGCGGTCGCCGGCAGTGGTGGCACGGCGTGCGTGGATTCGCTCGT
CGCCCGTAGTGAAGAAGAAGGAATGGGGAGGGCCGAACGACAATTTTCTTTTGTCGAGCGGTAA
GAAAATACGTCCACGGGATAACATGCAAAGTCGAATTTACCCTTTAAAATTTTATAGTACAATC
TAATTCAATGAAATATCAAATCAATCTATACCGTTAGATCGGTTATACTTGTAATATATACTGT
TAGTATATCTATCTATCTTCTATCTATCTATTATATACTAAAAGTCCATTAAACTCCCTACAAA
CGCTTTCAAACCGCCACATGTCATCCTACAAACGCTTCTAAGTCGCCACATGGCATTCTAATAA
ATAATAGAAATTCCTAGAAATTCTAAGAAAAAAACNAAACATCTGTCTATCCGTTTTCATTAAA
ATCGGTGGACCCATTATTTCAAGCCGTCAGATTTATCTAAAAAAAAATCTTTCCACCTCCACCT
CCTTCCTCCCACACGTAACATCACTTTCCCTTGTATATGTAGTCACGTATAAATATAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021