Detail information of BGIOSGA021292_circ_igg.1


General Information
CircRNA Name BGIOSGA021292_circ_igg.1
ID in PlantcircBase osi_circ_016157
Alias Chr06:17794116_17798957(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr6: 14626242-14631083  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TG-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCTCAAACCAGAAAAAGTATGAGTTTGCAAAGCGGTCCTCACTGCACTCTTCAAATGTCAAA
CCAAGAAAAGAAGTGCCCACCCAACAACTGTGTTCCctgaattggataagaagtagttaacatc
atggagcagcagtgtataagtgctgaaattgtaggaactgcaaatgtgcaaaatttctttgctg
aatgaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAATTGGATAAGAAGTAGTTAACATCATGGAGCAGCAGTGTATAAGTGCTGAAATTGTAGGA
ACTGCAAATGTGCAAAATTTCTTTGCTGAATGAAAGTTCCAATCTCCATAGGTTGTCTGGCCTC
CTGACAGTGGTGGAGGTTTACTTCCAGGTGAAATTAGTGGCATCAACTCAAATCCAGTATAGCC
TGCAAAATGAACTTGTGGTTCAACATTGCACAAAATTGTAGTACAACTGAGAAGGTAAAAAATG
AGGCACCAAATATCTTTGCCTTCATCCAGTCCAACACAACTACCATTTAACAAATTGTTGACCA
CAATCAATATCTTCTGGATCATCAGTGACAAACTATTATGTGATACTCTGACACAAGGCAATAG
TGCTAAAGTGCTCGCAAGTTTCTGAAAGATGAGAAAAATGAAAGGATCAGTCACAAGTGGCAAA
CTGATGATAATGAAAACTAAATCAATGATGGAATCAAATGAAAATTAAAATGGTTCAATAAAAG
CAAATTCCATGCCTTTGAATGTTGTAGATTGCATTGACCACTCATAATCTTTGCTGCAATGATG
GATTCAACCTGAAATTACTAATATCAGTATAAAACTTACTACAGTCAGTGAGACACAACCAATA
GATCCACACTTTGATGTAAGAATGTCAGCATTATCCATATACTTGTGAAGGTGAGCGTATATCA
TATTGTCACATAGAAATATCATTGCAAGGCATATAAGAAATGAGTGTGGGGTATGCTACCGACC
AGATGGAAACTGTGAATCTTTGATCAGCCAGATTGTGCTCTCCATTTTGTACTTAATGTGTCAA
ACCAGGTAAAAGGTAAGAGATGCATTTGACGTGCTAGATTCATAAATCAACTTGAGCTCAAGGT
ACCAACAAATTATGACGACAGAATGAGCGGTAGAGGTTATTATAATCTCTCTATTCCTATACTT
CTGATTACTAAAATAAGCATTCCCAATAAGCCACATCATAGAAAAATTGGAAGCCTTTGGATGA
AAGCATAGAAGAATAATAAACATGTATCCGACATCTACAGATACAAGAATGGCAGTTACCAAAA
TCATAGGACATGAAGTTAGCCAACCAAACCATATCATAACTGCCTACATGAAATAAATCTCTCC
GTGGACATGCTTGCACTGATAAAGCCCATAACAGACGGATATGCGTCAGTTATCACTGCACTAC
ACATGATCAAAAACCTTTTATAAAATAAATTACAAAGAACTGTCAGCAAAATATGGTTTAGATT
CCCCACATAAATAGAAGTGTGTTCTTCATTTAATTTCATATCCAGAATCGCAAGATGGTTTGGA
TTATCTGTTCCAATAATGAATCCTTTTCTAAGTATGGTGAATTGTTATGCTGCTCCTTTTATGT
TCTATGTTTAAAACAAAGTCCAGATCACTTAAACATTGGAAGAAACGGATCTAAACAACCCTAA
AAAAATAAATCACTGTACCCAAAATAATATGAAAATTGTGTAATTCTTGGACTTAATTCCTGGT
GATATCTGTGTAAATTTTGGACTTCATTCCTGGGGGTCATTAGACAGGTTACCAGCCTGCTCTG
GAATACAAGTTTATCCGTATGTCTTTGCTACAAACCAGGAGGAGTTGCTGAACATGAGATTCAT
TTCAAGAAATAACAGCAATTTCTTGGTGTCAAAGTTTCAATCAGTGTGACTTTTTGTATACTCC
CTCCTTTTCTAAATATTTGGCACCGTTGACTTTTTAGCACATGTTTGACCGTTCGTCTTATTCA
AAAACTTTTGTGAAATATGTAAAACTATATGTATACATATAAGTAAATTTAACAATGAATCAAA
TGATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAATAAGACGAACGGTCAAACATATTTA
AAAAAGTCAACGGCATCAAACATTTAGAAACGGAGGGAGTATTATATAGGAAATGCTCAATCAA
CCTGTCTAAAGGAACAGGAAGGTTATGAATATTCATGATGAAAATCAGGCAAAGGAGTAATATG
AACGATCAAAAGCCACAGACACCCGTACAAGTTAGCATACATCTAATGCTGTCTAATCACTCCA
TTTTAATGGCACTGGGCAATCAAAATGTAAAACAATAACCAGAAATTCACAAACAAAGAAATTC
ACATCATCAGTATACTTTTATGATGTGGCTGGTACAAACAAAGAAATTCACAAACAACAAAGGA
GATTACAAATAAAGTAGCTCATACTTTGTTGAAGTGCCGATATACTGATGATGGGAAGAGTTTC
ATAATTAAACCAAGTAAGTCAGTTGCTTTCTCCTGCACACATAAACAACAATATATTTTCTTAG
TGGAGAAGTTTGTATTTAGGAAATCATCTTGCTTGAAGTGTAAAGAAGCTTATACCGCAACAGA
ACCATCCTTGTCCAACAGCCGCAGCAATGGTTGGACAACTTTTTGGGCTAACAATGTTGCCTCG
TCCTTTAAATTTGAAAACTTAGCCAATCTGTTAAAAAAAATATGGGTTGCCTTGCTTTTATGCT
AAGCATTCTTATACTATGAAATTGCAACAAATGAGCAATAATGCTAGCTTTTTAGGAGTGGTGC
ACATTGCTTTTTCCATTGATGCCCTCCACTAGAATTCTCCCCTTGTTAAAGAATTTTATTGAGA
TTGTTGAACTCAATAAAATTCAGTGGCAACCCAGTTTGGTGACTGCATGATCAATCGCACTATT
TTTCTTTTGACTTAATTAGTCAGTTTGACTTAAGTGAAACAACTAAGGAACTTTACTGTCATGA
ACACAGAAATAACATAGAACTCCAAGTTTTGATCATCTAGTACGGACCTTAATCATGCATTCTC
AGACACAAGCAGTACGCCTCAGGGGCATACCTATGTATATCTTCCCATGTGCACAACACAGGAC
CATCGGTAGATTGTTCTCCTCTAGTTGACTTATGCCATGCTAATTATCATATTAGTCAATGGTT
AGATCATTAGTACGTATAGGACCCTCGGTAACTTTTGTACTAGATTTGCCACTGGTACACCTGC
TGAATATGGGCCTTTATATGCTATATATAATAATACTTTGGGCAAGTATAAGTTACAACCTGTA
TAGGTTATAACAAACTACCAAACTGCACATTTAAACTTGTAGTTCAAAAGACTACAAATTTTAC
ATACAAAGATAGTAAGGAGTTGTAATATTTTACATCCATAATGAAATGACGTTAGAATGCCACT
AAAAGTGCTTAATTTCAAGGTTTAACCTCATCTTCGTATATATTTTCTCTTTGAAGGAATTTGC
ATTTTATTACCATGTCCTATGCATTCTTTTTATTTTACTTGTACAATTTTTGCAGCTCTATATA
GCTGATGTGTTCATGAAAACCACACGTGATAGATGTTGACTCACTGTTGAAACATTGCAACCCA
TTTGTATTCCTTTATGCTTTACTATTAAATGATCATAAATGCACTCCCCAATAGGATAGTCAAA
AAAATTCAGTTAGCCATACATGTCACATACCTCATAAACAGACTAGCCATAGCAGTACAAGTGG
CTATGCTTACCATTTTGTTGCTAGATGGGACCTGCTCAAAGTATTATAGAGAATCTATCAGTTT
ATATTCCAAGAAACAATAGCCATGCCATGCATGAGACAATCCATATTATATACTAATACAACAT
AAATAATCAAATTTGGAACATAAACAGAATAATTTAGATGATACCATTCTTCTGTTTGTAGATT
GGCATGTGTTGGAACAAATTATATGTTAATTTGATTAGTAACAATAAAAGGGAATTGAAATGGA
TACAACTGTTTGAAGCAGTTATGTTCTGAAGCACCTTATGTAGAGAGTCACTCAGTCACAGACT
GTAATGACTTGATTTATAATTATTTGGCATGTCATGTATCAGTAATATGAATTGAAAATAAAGG
CAATGTAGTTTTAAAAAGTAGACAGAATCTCAGTCCCACATACAGCTTGAAATAGAACAATATT
GTAATTTTATATTACAGGAAGACCAGAAACAACTCTGTGGATCATTATAAGAGCTGATCAATTA
CTTCCTAGATTTCAGGAAAATAACTAAACAGGAACATAAGAATCCTAATACATAAAAGTTCTTT
TTGCCTACATTAATTCAGATAGACCCTCCTATTAAAAAAATTCAGATTGACCTTCACTTATAGT
TTGTTTTTGAGCATTCCAAAAGCATTTGAAGTTTGGACTGTATTTTTTCCTGCCTTCTGACAAG
GTGTGCAAACTAAAATGTTCTGGATCTAGGAGCAGAAAGAAATAAGGATAGAGTTGAACCAGAA
CCCAACTTCTTCATTTGCATTCACTGTTCAGAATTTTATTGATCAACGATTACTAAGACCAAAA
TAGATTGTTCAATAGAATGTCTAGTGTGCTAAATTATATTTAGAACAACATTGTCTGCATGAGT
TGTACTGAGGATTCCTCATTTCTTCTGCACATTCTTAAAATATCTAAATATTTATAACAGCAAA
ATTCACTATCATCTGATCACACATATAGTAACTTAAATGTCAAACTTTCTTTTCCATTAGAACT
GCAAAAAAGTGAAAAAAAAACATATAGTTCACAACAGAATTATGAGAAATATAATGCATGAAAC
CTACAAAATGTGAATACATGTATTTAAAACTGCATTAAAATATGTATGTTACCTTAATTTTTTT
CATAATCTTCTCAAACCAGAAAAAGTATGAGTTTGCAAAGCGGTCCTCACTGCACTCTTCAAAT
GTCAAACCAAGAAAAGAAGTGCCCACCCAACAACTGTGTTCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021