Detail information of BGIOSGA015066_circ_g.1


General Information
CircRNA Name BGIOSGA015066_circ_g.1
ID in PlantcircBase osi_circ_014381
Alias Chr04:22008617_22010839(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19561890-19564112  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015066
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015066-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAACCTTTTGAGTGAGCTTGTACAAAGTGCAACTTCCCCAGCCAGCATTTTAACCTGCTCTTG
AAGAAGATCAATTTGATCCACGATAGTTGTTCCACTccttttcttggcaaatctttgacaacgc
ttctacatgaaaattttgtaactcttccaggactttgacatctaagcctcttagatcctcgccc
tgaaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTCTTGGCAAATCTTTGACAACGCTTCTACATGAAAATTTTGTAACTCTTCCAGGACTTT
GACATCTAAGCCTCTTAGATCCTCGCCCTGAAAAAAGTTCACAGTAGCATCATAAGAGCAGAAG
CACGATGGCTAGATGCATTTCAGGTATATCTGCAGGAAGGGAACAAAAAAAAAAGAAACTGTGG
AGCGTAGATGCAAGCAGAGCTATCCAGTTTGCTGTGGGAATAATTACTTCAAGGGTGAATATAA
TTTGGTGAATATAATTTGGATCACCTTCAATCTGGAAACAATGCCTTCCAACTCTTTGCAGCGC
CTTCTTTGAACATTGTATGCCGCTTTTGCTTCTTCATAAGTGCTGACACTGACACCATCCCAGT
TCCTATTATCTGAAGCTTCCATTCCACTCATCATCCTGCCAGTATCACTCTTCGATGAATGATA
GCCATTTTGTGTTGCCTTGAATTGGAACAAGTCCTCCTGAGAATTTTCTTTCTTTAACTCTGCA
ACAAGCATCCACATGTTTGCCAGTTCATTTTCCAAATCATGCTCACGGCATTTTGCATCTTCAA
TAACCTTTAGAAGTTCACTCTCTCTTCGGGCCCTTTGGGACAATGTGTCCTCTAACACAGCCTC
CCTCTGACAGCTAGCAACCAACTCTTTCTGCAGCTCCTCTACAAAGATTCCATTCTCCTGATCA
CGGCGTTTTGTGTCACTCTGGATACTGCTCCTTGTTTGATCTTTTGCTGCAGCTAAATCTGCAT
TCAGCTTTGCATTTTCATAAGAAAGCCTCGTAACTTCTTCTGCCAAGTTCTTTAGTTCAACTGC
AGCGGCAGCTGCCAATTCTTTAGCATAGGATGATTCTTCAGCCAGCTTTTGACTGTGAATTTCC
AGCCCATCTTTCTCTTCTGCCAACCTCAGCTTGTCTAGCTTCAAATTCTCGATTTCTGCAGCCT
GCAGCATCGATTTCTTGGTTTTCAGGTAACAGATAATCAAAGAATATGAATGCAGACAGACTAA
ATTATCGGTGATGAACTTAGGGGCATATTAATTTTACCTGCAAGAGCACTTGAGATTTCAGTGG
TGACTCCGTATGATCTTCAGTTGTTCTAGAGGGCATTTTTGAATGACTTGCAACTTCATTTGCC
AGATCCCTAGGATTGCTGCTTGTACTTGATGGCTCACTTGACTGCATACTAGCCACATTATCCT
CGTTTTTGGCAGTCTTCAACAGATTATCAATTTCTTGCCTCAGTTGAGCAACTGTTTCTACGAG
TTCTGCATTTTCTGATACCTATTTGGGTACAAAAAGTGAAATCGAATTGATCTGTTGAACAGCG
ATTAGATAATAGGTCCCACCCTCTGCTCACCTTTGCTTGTAGCTGGTCCTGAAGAATTCTATTA
TCTGCAGACATGATCTAGACAAACCACCGAACCAGAAAGAGAATGGTAATTATCCAAACATAAA
TATCATATGAAGAAACGACTATTAGCTAACATGTGCACTAGAACAAACCTCCAACTCAAATGTC
TTCTCGCTCAATTGTGTGCTTAACTTTGAAAAGGTCTGTGAGAACATCAGATTACACGAAATAT
TCAGATCATTGACATAGATAATGGCCATCAAAACACAAAATATTCTAGCATACCATCAGCACAT
AGAATGGAGAGCAAAACGATCAAGGGAAAAAGGGTAGACATACTTAAAACAAAAAACATAACTA
CAATATGCCCAAACATCAATCTTTATGAAGTTGGCACCAGCCAATCAAAGATAGAATTAAACCT
CCTGGTTTATCATGTAGCCATTTAACAAGTATTACCTGGGACATTTCAGTCCTAATAGCTGGGT
CTTCGGTAGTTTCCAATGATTGCGCCATACGCTGCTCCAGCACACGTATATGCGATTTCTTTTC
GTCAATTTCATTTTTCAATTTTTCAATTTGTTCCTGCAGAAAGGGGATAATAAAAAAAACACTA
AGTGCCTTTTGAAATGTATTATAGTTGAGGCTAACCAAGCTGCCGAAGAAACATGATTACAAAA
GAATAGGTCAGAAAGGATTATGACATAGGTTTACCTGAATTTGTGAATCATCAGGATTGTTTGC
AGCTTGCTCTGACAACCTTTTGAGTGAGCTTGTACAAAGTGCAACTTCCCCAGCCAGCATTTTA
ACCTGCTCTTGAAGAAGATCAATTTGATCCACGATAGTTGTTCCACT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021