Plant Circular RNA Database

Detail information of GLYMA_15G044500_circ_g.2

			
						 General Information
					
						CircRNA Name
						GLYMA_15G044500_circ_g.2
					
						ID in PlantcircBase
						gma_circ_009282
					
						Alias
						ciRNA656
					
						Organism
						
							Glycine max						
					
						Position
						
							chr15: 3552292-3552943  JBrowse»						
					
						Reference genome
						
							v2.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI, CIRCexplorer
					
						Parent gene
						
							GLYMA_15G044500						
					
						Parent gene annotation
						
							hypothetical protein
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						pod
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							AG-TG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						KRH10389:1
KRH10387:1
KRH10381:1
KRH10378:1
KRH10390:1
KRH10395:1
KRH10376:1
KRH10371:1
KRH10377:1
KRH10379:1
KRH10365:1
KRH10388:1
KRH10386:1
KRH10382:1
KRH10375:1
KRH10370:1
KRH10374:1
KRH10373:1
KRH10369:1
KRH10367:1
KRH10372:1
KRH10366:1
KRH10368:1
KRH10380:1
KRH10385:1
KRH10384:1
KRH10383:1

General Information
CircRNA Name	GLYMA_15G044500_circ_g.2
ID in PlantcircBase	gma_circ_009282
Alias	ciRNA656
Organism	Glycine max
Position	chr15: 3552292-3552943 JBrowse»
Reference genome	v2.0.38
Type	u-circRNA
Identification method	CIRI, CIRCexplorer
Parent gene	GLYMA_15G044500
Parent gene annotation	hypothetical protein
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	pod
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	AG-TG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	KRH10389:1 KRH10387:1 KRH10381:1 KRH10378:1 KRH10390:1 KRH10395:1 KRH10376:1 KRH10371:1 KRH10377:1 KRH10379:1 KRH10365:1 KRH10388:1 KRH10386:1 KRH10382:1 KRH10375:1 KRH10370:1 KRH10374:1 KRH10373:1 KRH10369:1 KRH10367:1 KRH10372:1 KRH10366:1 KRH10368:1 KRH10380:1 KRH10385:1 KRH10384:1 KRH10383:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GGTGAAATCAATCTAAGAATGCATTAGGGATCAATACAAAAATTTGATTCGAATATTCGATGGA
GAAATTAGGGCGACGGATTGGAGCTCCATAACTCACttactgacataaaagccaagcaaacact
gctacaagcggaaaaagtctactttcagtgaactaaatactattttgcctcaggaacccaacaa
caactatg

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TTACTGACATAAAAGCCAAGCAAACACTGCTACAAGCGGAAAAAGTCTACTTTCAGTGAACTAA
ATACTATTTTGCCTCAGGAACCCAACAACAACTATGATAGTGCAAATTATCATCTGCCCCTTAA
TAACAACGTTTTGCACTGTCACACAGTCACTTTAGGAAACTATAACAAAAAAAATCAGGAAAAA
AGTCATGCATTAGACAATATGCGAAATTCGAAATACAATTAATTAACAATTAGTCAATTACACA
AGGGAAGTGGACTACAACCGTAAAACACAGCCTCAATTCTTATACTTAAATTCAAATAAAAATA
AATAAATAGATTGAAGCACGTCGCTGAGAAACCTCAGATCAACTAAACACTAATCGGAGCATAA
AATCAGACAAGCAGAAAGGGAATAAATGGCAATCAAAGACCTAACCGCGATTGTTCAAAGCAAA
CAAAATCGAAATCCGAGAAAATCCGAAAAGTCAAAGCTGGAAAGTGAATTTAAATATTAGAAAA
CAGCAACGAAAGGACAAATTGATGAGCGATAACAATGATCGGTGAAATCAATCTAAGAATGCAT
TAGGGATCAATACAAAAATTTGATTCGAATATTCGATGGAGAAATTAGGGCGACGGATTGGAGC
TCCATAACTCAC

Sequences
Splice junction sequence	GGTGAAATCAATCTAAGAATGCATTAGGGATCAATACAAAAATTTGATTCGAATATTCGATGGA GAAATTAGGGCGACGGATTGGAGCTCCATAACTCACttactgacataaaagccaagcaaacact gctacaagcggaaaaagtctactttcagtgaactaaatactattttgcctcaggaacccaacaa caactatg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TTACTGACATAAAAGCCAAGCAAACACTGCTACAAGCGGAAAAAGTCTACTTTCAGTGAACTAA ATACTATTTTGCCTCAGGAACCCAACAACAACTATGATAGTGCAAATTATCATCTGCCCCTTAA TAACAACGTTTTGCACTGTCACACAGTCACTTTAGGAAACTATAACAAAAAAAATCAGGAAAAA AGTCATGCATTAGACAATATGCGAAATTCGAAATACAATTAATTAACAATTAGTCAATTACACA AGGGAAGTGGACTACAACCGTAAAACACAGCCTCAATTCTTATACTTAAATTCAAATAAAAATA AATAAATAGATTGAAGCACGTCGCTGAGAAACCTCAGATCAACTAAACACTAATCGGAGCATAA AATCAGACAAGCAGAAAGGGAATAAATGGCAATCAAAGACCTAACCGCGATTGTTCAAAGCAAA CAAAATCGAAATCCGAGAAAATCCGAAAAGTCAAAGCTGGAAAGTGAATTTAAATATTAGAAAA CAGCAACGAAAGGACAAATTGATGAGCGATAACAATGATCGGTGAAATCAATCTAAGAATGCAT TAGGGATCAATACAAAAATTTGATTCGAATATTCGATGGAGAAATTAGGGCGACGGATTGGAGC TCCATAACTCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.065732413

Conservation Information
Conserved circRNAs	NA
PMCS	0.065732413

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021a

circRNA

Detail information of GLYMA_15G044500_circ_g.2

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