Plant Circular RNA Database

Detail information of BGIOSGA021859_circ_ig.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA021859_circ_ig.1
					
						ID in PlantcircBase
						osi_circ_016697
					
						Alias
						Chr06:2960285_2971487(MH63RS2)
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr6: 3636537-3640996  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						root, leaf, panicle
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							AT-NN							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	BGIOSGA021859_circ_ig.1
ID in PlantcircBase	osi_circ_016697
Alias	Chr06:2960285_2971487(MH63RS2)
Organism	Oryza sativa ssp. indica
Position	chr6: 3636537-3640996 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	ig-circRNA
Identification method	CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	NA
Support reads	NA
Tissues	root, leaf, panicle
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	AT-NN The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCGCAGTTAGGATATAATATTTTTATAGCACAGAGGTGTAAATTTAATGTGACTATAAGTTTCT
AGGCGTATACAAATCAACCAAATACCAGTAGGGTCTcgcggaggtcgcggatctcgtcttggag
ctcggcgaaggtgaaggggcatgtgccgtcgtcgatggattcgagcaggtcacgcacgtagcct
ctgttgct

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CGCGGAGGTCGCGGATCTCGTCTTGGAGCTCGGCGAAGGTGAAGGGGCATGTGCCGTCGTCGAT
GGATTCGAGCAGGTCACGCACGTAGCCTCTGTTGCTGGCTATCAACCGCTCGGTGTCCGCGAGG
AGGTCCGAGATCCACCCCAGCTGGATCGCCACCGCCTCTCTCTCAGCCGCGTTCATCATGGCCC
TATCTTGAAATGAACTAGCAGACGATGATGATGACGATGACAACGACGACGACTCGCGCTGAGA
TGGAACGAACGATGAGACGCAGCAGCTGAGACCGGGAGTTCGGTTATATAATAGGCGCCGTGCG
CACAAGCGACGAATCGGAATGGGGAGTCCGCGTCGGAATCCGAAAGAGCCGTTGAATCCGACAC
GGATTGTGTTGGGCCGCTTTCTGTAGGATGTAACGGGCCGAGTCCGGCGAGACTGGGCCGGCAC
GGCGGATAGGAATGCAGATGGGTTCAACCGGCTCCGATCATCCGATGGACTTTTGGTCCGCCGA
CCTCGGTGGCTCGATCAGAATGTTTTTTTCTTTCTGACATCTAGTGAGAATTCGTTATTTAGTT
ATCTTCTTTACGGTTGCTAGCTGTTACTTCATTTTTTTTCCTAGCTGTTGACTAAGAGATAGTC
TGATATGAGCTCTTAGTTAATAAATACTTCATCCATCCCATAATATAAGGCGCCCATGCATTTC
AAGATTTCATCTTCATAATATTTTGACTAACATTTAGTACAATATGAATTGAATTTTACTTACT
AAAAAATTATATCATTGAATTGACATTTAAATTTATTTTCATATGGTTATAATTTTGTTACTAC
AAACTTTATTATATATGAGAAATTATAAGATAAAAATTAGTTTTGTAGACCGTGTCAAGTTTGA
CTATTCCTTGTATTATAGGATATAGGGAGTACTCACTTAGTGACTATTCTCCTATAATAATAGT
TGAGACAACAATTAAATTTTTTAAAAATGTTGAGACAACAAAACTTCTTAATCATTAATTCCCC
CCAAAAATATATTACTCTTCTTTCCTTTTCTCTATCCCGTGCAACAAAATATCATTTAATAAAT
GCTAAGATTCCCCCCAAAAAAATATATTACTCTTCTTTCCTTTTCTCTATCCCGTGCAACAAAA
TATCATTTAATAAATGTTAAGAGTCGCCTATGAGCTTTTGTAGGTCATATTTAAATGTAGAGCC
CATATAGACTCTTAGATAATGCATGTTTATTAAAGACTATATCCTTACAATGGTAGAGACACCA
AAGACTCTAAACCATTAATCCACAAATATTATCTTTTTATTATGGTTCACACACTCATGCAACA
AAGTTTTCATTTTATAGAGGCTAAGAGTCGTTAAGCAGTTGTTAACCGTAGCAACAATGTCTGT
CTCTTCTTGCTTCTCTCTCTTCCATCTAACCAAATTCAATTGCATGTTAACGTAAAGAGCTCGT
TAATAAGAATCTTGTACATGCCCTTGCTGTGAAGTTTACAAACTGCTGAAATTTCAAACTACTA
AGTAGAATGTGCGCCTGAACAATTTTATGTTCTGACATGTGCTGTTAGTTTCAATGGTTATTTT
TTTAGTTCGAATGGTTATTGTGCATGATAATTGATGCAAACCGATCATCCACCCATTCCAGAAG
CGAAATATGCATATCGTTCAAAAAAGAAGCGAAATATACATATGCTCAATTCTCCAATTGTAAA
TTAATTCATCAGGCATTGCCTGTGTACCTTTTTCACTCAAAACTCAATTTGTCCCAACATAAGT
ACATAGGACTTGAACCCAGAAAGAAAAAAGAAAATCAATCCAACGGCCTTGATTAAACTGGTCT
TTTTTTTTTCTTGAAAGGAAGGCAAGAAATTTGCCTTATATATTGATAGAGAAGGAGGATTAAA
CTGGTCTTGCCCCTGTTCTGCCTTACGGACGACTACGGTGAAGACCATCCCGGACTCCCCTGTC
CGTTATCCACTCCGATTCGACGATGATGGTTCATCGTGTCGTACGACGCGGCCCAATAAAAACA
GCATGTAAAAATGTACCATCAAAACGTGAAAAGCTGCAGCAGCAGCAGGAAGAAGAAAAAAAGA
TGCCGGCCGAATCGTCGACTTGGCGCGTGTTCCGCCGATTCGCAAACCCCGCTCACCTGCAGGC
TGCAGCATCATCCGCAGTTCCCGTGTCGATGTCGACGGCAGGTTCGTTTACTATCACCCCAATC
CTTCGGTTTTTAACCAGTACAATTTTGTTTTTTCTATATAAGATGTACTCCCTCCATATAAAAA
GTCTAAGACATATTTCATTCTTTGTTTTTTTAAAAGTCTAAGTCTTATTTGTAGTCACTATGTG
GTAATTAAATTGTTGATCGGAACCGAAGTCATTTTATATTAGTACTTATTGGTTACATGCTCAT
TGGTTTTATCACATGGTGAATAAATTAATTGGTCATTGGTCTTGATAAAAAAGAAATATGCCTT
AGACTTTTCAATGATGGAGTATTTGGTCAAAAATTTTCCTAAATGGGTTATTATATCTTTTTAA
AAGATTTGTTTCCCATAATGGTACATAATTTGATTTAATTTGTGCGGGCCCATCTATTTTATGT
GCATTTAGCTGAATATCTTCGAATTCGTACGAGATATGTTACATCGTGTATGTCTTCTCAGACT
CATGACGTTTATACTAGATATACAGTTCCGCCCTACTTCTACAATTACTCGTGCTTGTCTATTT
GTCCACTCGTGACGGACCTATGTTTTTTTTTCTTTTGTCCTGGGTGTGCTCACATAGTCCCAAT
CAGAGTTATTCATATACACAAACACACTAAAAGATCTTAATTTATCAAAAGTACATTAATTACA
AATAGTGCAAATAAAGTCTTACACACATAACGTATAAACAATGAAAACAAAATATATTTGTGTA
TGCTTTTTATAGCAAATATGGCTTGATTACATCATGATTAGTGATTCATTTCTAATCTTAGGAA
AAGCTATATGAAGGTGCTAATCTTTACACACTTAATCCTCCTCATATTTACCTTACTAAAAAGA
AAAATGCTAAGATTTCCACACAAAATTCTTGGCTTCCCATGTACTTGAAGTCTAGAATTTACGT
CCCCGAAATGTTTATATTGAGTACCAAATTTGAATCATATAAATACTTATATTTAGCAATAATT
GGAGTAATTGAATAAATAATGTAGGTCAAAATTTAGGAAAAACTCAGTAGTGTCATATACGCTC
CCCCCCGGGCATTACCAAATAGCATTTGTAGTATTCAATTTTTTTAATATAAAATAAGCATTTT
TTTTGGGACAACGATTCGCCAAGCATTTTCAGCCAATAAGATAGAATTTGTAGCATCCAATCTT
TTATACAAAATAAGCATTTTGGGAACAATGATTTTCCAAACATTTTTCAGCTAATAATATACTT
AGAAGGGAACCAAGAAATTCAAATTCAACCCATGAAGTGACTAAAAGGATATATTTTCTCGTTA
TATGCGTGCAACAATCTAAAAAGTTGAGAAAAATTTCTACATACCCCTAAAAAGTTTTGTAATC
TCTTCTACGCCCCTTGAATTTTGCATCATCCCCTACATGCCCTTGAGTATTCATTTTGATCTCT
TATATCCCTACTTTGTTAATTGGCTGTTAGATTTTTCTAAAATGACCATATCGCCCATTTCCCA
TACTTACATGGGGTCTACTTCATAATTTACAATGTGAAAAATTGTTATTCCTGATAAAATCAAA
CGGGGGCATAATTATTTATTGTAAAATTCGAAAAAGAAAATTTAAATTGTTAAACAAATTATTT
TTTGACAATTTTAGCTAGAAGTTATAAACAAAAATTATATATTTGTTGGGCTCAAATTTTGATG
AAAACAGTGAACGAATTACATAAAAGTTAATTCAAAATTTATTTAAAAATTCTAGATTTTTTTA
TAAAATTTATTGTCATCCATTGTTTTAAGAATTGTGTTTTTATCACTAAACTAGCACATAAGTA
TAAGAGAGGGGTAATATAATCAATTTAAAAAATATTTAACGGTCAACTCATGATCAACTAACAG
AATGAGCATAGAGAAAATCAAATTAAAAACTCAGGGTATATAATTTATGAGGCAAAATTCAGGG
GCACGCAAAAGATTGAATGAATTCTCAAGGGTATATAGAGGATTTTCTCTAAAATGTTAGGAAC
AAATAGAAGTATTTAACATCGGAGGAACTGAAATTGCGCACTGCATAGCCTTGTAATCTTGGGC
TTAGCAATATGTATTCCTTCCTTAAAAAAAGATTAATTCTGGGTATGAACCTCGACATGCATGC
ATCAAGATTCGCAGTTAGGATATAATATTTTTATAGCACAGAGGTGTAAATTTAATGTGACTAT
AAGTTTCTAGGCGTATACAAATCAACCAAATACCAGTAGGGTCT
						
					

			
		

Sequences
Splice junction sequence	TCGCAGTTAGGATATAATATTTTTATAGCACAGAGGTGTAAATTTAATGTGACTATAAGTTTCT AGGCGTATACAAATCAACCAAATACCAGTAGGGTCTcgcggaggtcgcggatctcgtcttggag ctcggcgaaggtgaaggggcatgtgccgtcgtcgatggattcgagcaggtcacgcacgtagcct ctgttgct
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CGCGGAGGTCGCGGATCTCGTCTTGGAGCTCGGCGAAGGTGAAGGGGCATGTGCCGTCGTCGAT GGATTCGAGCAGGTCACGCACGTAGCCTCTGTTGCTGGCTATCAACCGCTCGGTGTCCGCGAGG AGGTCCGAGATCCACCCCAGCTGGATCGCCACCGCCTCTCTCTCAGCCGCGTTCATCATGGCCC TATCTTGAAATGAACTAGCAGACGATGATGATGACGATGACAACGACGACGACTCGCGCTGAGA TGGAACGAACGATGAGACGCAGCAGCTGAGACCGGGAGTTCGGTTATATAATAGGCGCCGTGCG CACAAGCGACGAATCGGAATGGGGAGTCCGCGTCGGAATCCGAAAGAGCCGTTGAATCCGACAC GGATTGTGTTGGGCCGCTTTCTGTAGGATGTAACGGGCCGAGTCCGGCGAGACTGGGCCGGCAC GGCGGATAGGAATGCAGATGGGTTCAACCGGCTCCGATCATCCGATGGACTTTTGGTCCGCCGA CCTCGGTGGCTCGATCAGAATGTTTTTTTCTTTCTGACATCTAGTGAGAATTCGTTATTTAGTT ATCTTCTTTACGGTTGCTAGCTGTTACTTCATTTTTTTTCCTAGCTGTTGACTAAGAGATAGTC TGATATGAGCTCTTAGTTAATAAATACTTCATCCATCCCATAATATAAGGCGCCCATGCATTTC AAGATTTCATCTTCATAATATTTTGACTAACATTTAGTACAATATGAATTGAATTTTACTTACT AAAAAATTATATCATTGAATTGACATTTAAATTTATTTTCATATGGTTATAATTTTGTTACTAC AAACTTTATTATATATGAGAAATTATAAGATAAAAATTAGTTTTGTAGACCGTGTCAAGTTTGA CTATTCCTTGTATTATAGGATATAGGGAGTACTCACTTAGTGACTATTCTCCTATAATAATAGT TGAGACAACAATTAAATTTTTTAAAAATGTTGAGACAACAAAACTTCTTAATCATTAATTCCCC CCAAAAATATATTACTCTTCTTTCCTTTTCTCTATCCCGTGCAACAAAATATCATTTAATAAAT GCTAAGATTCCCCCCAAAAAAATATATTACTCTTCTTTCCTTTTCTCTATCCCGTGCAACAAAA TATCATTTAATAAATGTTAAGAGTCGCCTATGAGCTTTTGTAGGTCATATTTAAATGTAGAGCC CATATAGACTCTTAGATAATGCATGTTTATTAAAGACTATATCCTTACAATGGTAGAGACACCA AAGACTCTAAACCATTAATCCACAAATATTATCTTTTTATTATGGTTCACACACTCATGCAACA AAGTTTTCATTTTATAGAGGCTAAGAGTCGTTAAGCAGTTGTTAACCGTAGCAACAATGTCTGT CTCTTCTTGCTTCTCTCTCTTCCATCTAACCAAATTCAATTGCATGTTAACGTAAAGAGCTCGT TAATAAGAATCTTGTACATGCCCTTGCTGTGAAGTTTACAAACTGCTGAAATTTCAAACTACTA AGTAGAATGTGCGCCTGAACAATTTTATGTTCTGACATGTGCTGTTAGTTTCAATGGTTATTTT TTTAGTTCGAATGGTTATTGTGCATGATAATTGATGCAAACCGATCATCCACCCATTCCAGAAG CGAAATATGCATATCGTTCAAAAAAGAAGCGAAATATACATATGCTCAATTCTCCAATTGTAAA TTAATTCATCAGGCATTGCCTGTGTACCTTTTTCACTCAAAACTCAATTTGTCCCAACATAAGT ACATAGGACTTGAACCCAGAAAGAAAAAAGAAAATCAATCCAACGGCCTTGATTAAACTGGTCT TTTTTTTTTCTTGAAAGGAAGGCAAGAAATTTGCCTTATATATTGATAGAGAAGGAGGATTAAA CTGGTCTTGCCCCTGTTCTGCCTTACGGACGACTACGGTGAAGACCATCCCGGACTCCCCTGTC CGTTATCCACTCCGATTCGACGATGATGGTTCATCGTGTCGTACGACGCGGCCCAATAAAAACA GCATGTAAAAATGTACCATCAAAACGTGAAAAGCTGCAGCAGCAGCAGGAAGAAGAAAAAAAGA TGCCGGCCGAATCGTCGACTTGGCGCGTGTTCCGCCGATTCGCAAACCCCGCTCACCTGCAGGC TGCAGCATCATCCGCAGTTCCCGTGTCGATGTCGACGGCAGGTTCGTTTACTATCACCCCAATC CTTCGGTTTTTAACCAGTACAATTTTGTTTTTTCTATATAAGATGTACTCCCTCCATATAAAAA GTCTAAGACATATTTCATTCTTTGTTTTTTTAAAAGTCTAAGTCTTATTTGTAGTCACTATGTG GTAATTAAATTGTTGATCGGAACCGAAGTCATTTTATATTAGTACTTATTGGTTACATGCTCAT TGGTTTTATCACATGGTGAATAAATTAATTGGTCATTGGTCTTGATAAAAAAGAAATATGCCTT AGACTTTTCAATGATGGAGTATTTGGTCAAAAATTTTCCTAAATGGGTTATTATATCTTTTTAA AAGATTTGTTTCCCATAATGGTACATAATTTGATTTAATTTGTGCGGGCCCATCTATTTTATGT GCATTTAGCTGAATATCTTCGAATTCGTACGAGATATGTTACATCGTGTATGTCTTCTCAGACT CATGACGTTTATACTAGATATACAGTTCCGCCCTACTTCTACAATTACTCGTGCTTGTCTATTT GTCCACTCGTGACGGACCTATGTTTTTTTTTCTTTTGTCCTGGGTGTGCTCACATAGTCCCAAT CAGAGTTATTCATATACACAAACACACTAAAAGATCTTAATTTATCAAAAGTACATTAATTACA AATAGTGCAAATAAAGTCTTACACACATAACGTATAAACAATGAAAACAAAATATATTTGTGTA TGCTTTTTATAGCAAATATGGCTTGATTACATCATGATTAGTGATTCATTTCTAATCTTAGGAA AAGCTATATGAAGGTGCTAATCTTTACACACTTAATCCTCCTCATATTTACCTTACTAAAAAGA AAAATGCTAAGATTTCCACACAAAATTCTTGGCTTCCCATGTACTTGAAGTCTAGAATTTACGT CCCCGAAATGTTTATATTGAGTACCAAATTTGAATCATATAAATACTTATATTTAGCAATAATT GGAGTAATTGAATAAATAATGTAGGTCAAAATTTAGGAAAAACTCAGTAGTGTCATATACGCTC CCCCCCGGGCATTACCAAATAGCATTTGTAGTATTCAATTTTTTTAATATAAAATAAGCATTTT TTTTGGGACAACGATTCGCCAAGCATTTTCAGCCAATAAGATAGAATTTGTAGCATCCAATCTT TTATACAAAATAAGCATTTTGGGAACAATGATTTTCCAAACATTTTTCAGCTAATAATATACTT AGAAGGGAACCAAGAAATTCAAATTCAACCCATGAAGTGACTAAAAGGATATATTTTCTCGTTA TATGCGTGCAACAATCTAAAAAGTTGAGAAAAATTTCTACATACCCCTAAAAAGTTTTGTAATC TCTTCTACGCCCCTTGAATTTTGCATCATCCCCTACATGCCCTTGAGTATTCATTTTGATCTCT TATATCCCTACTTTGTTAATTGGCTGTTAGATTTTTCTAAAATGACCATATCGCCCATTTCCCA TACTTACATGGGGTCTACTTCATAATTTACAATGTGAAAAATTGTTATTCCTGATAAAATCAAA CGGGGGCATAATTATTTATTGTAAAATTCGAAAAAGAAAATTTAAATTGTTAAACAAATTATTT TTTGACAATTTTAGCTAGAAGTTATAAACAAAAATTATATATTTGTTGGGCTCAAATTTTGATG AAAACAGTGAACGAATTACATAAAAGTTAATTCAAAATTTATTTAAAAATTCTAGATTTTTTTA TAAAATTTATTGTCATCCATTGTTTTAAGAATTGTGTTTTTATCACTAAACTAGCACATAAGTA TAAGAGAGGGGTAATATAATCAATTTAAAAAATATTTAACGGTCAACTCATGATCAACTAACAG AATGAGCATAGAGAAAATCAAATTAAAAACTCAGGGTATATAATTTATGAGGCAAAATTCAGGG GCACGCAAAAGATTGAATGAATTCTCAAGGGTATATAGAGGATTTTCTCTAAAATGTTAGGAAC AAATAGAAGTATTTAACATCGGAGGAACTGAAATTGCGCACTGCATAGCCTTGTAATCTTGGGC TTAGCAATATGTATTCCTTCCTTAAAAAAAGATTAATTCTGGGTATGAACCTCGACATGCATGC ATCAAGATTCGCAGTTAGGATATAATATTTTTATAGCACAGAGGTGTAAATTTAATGTGACTAT AAGTTTCTAGGCGTATACAAATCAACCAAATACCAGTAGGGTCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhou et al., 2021

circRNA

Detail information of BGIOSGA021859_circ_ig.1

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