Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d020157_circ_g.1 |
ID in PlantcircBase | zma_circ_009321 |
Alias | zma_circ_0002777 |
Organism | Zea mays |
Position | chr7: 96202681-96206241 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d020157 |
Parent gene annotation |
UBP26 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d020157_T027:6 Zm00001d020157_T019:6 Zm00001d020157_T014:6 Zm00001d020157_T030:6 Zm00001d020157_T038:6 Zm00001d020157_T036:6 Zm00001d020157_T040:6 Zm00001d020157_T042:6 Zm00001d020157_T032:6 Zm00001d020157_T011:6 Zm00001d020157_T023:6 Zm00001d020157_T028:6 Zm00001d020157_T003:6 Zm00001d020157_T047:6 Zm00001d020157_T046:7 Zm00001d020157_T049:6 Zm00001d020157_T018:6 Zm00001d020157_T017:6 Zm00001d020157_T009:6 Zm00001d020157_T002:6 Zm00001d020157_T026:6 Zm00001d020157_T048:6 Zm00001d020157_T021:6 Zm00001d020157_T034:6 Zm00001d020157_T004:6 Zm00001d020157_T001:6 Zm00001d020157_T008:6 Zm00001d020157_T044:6 Zm00001d020157_T007:6 Zm00001d020157_T013:7 Zm00001d020157_T025:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.101333153 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
96206237-96202749(+) 96206193-96202699(+) 96206179-96206214(-) 96202738-96206214(-) |
Potential amino acid sequence |
MELGISSDIRLSGSQIIVCVIKRLA*(+) MLEPFHVHIELHHCRWNSGSVLI*(+) MKRLSSVAWQKLHSKYGGGPILNSDDFCMECLKDGAKSAVSADVYRERRASLKTLAEAALAGNC PDGPSYFISKTWLTHWLRRKNADIPSDGDNGPTSALRCCHGDFLPEHAPGAKRVSVPEILWLFL YQTVHEKKADDTVTFPSDSHPCETCSRELSDVASVEVNLRAVKLKQRQNHEKLISGKSFALHPG QKYYLVPSSWLSEWRAYITATGKNISSLPEPQTLEAVARSLICEKHSRLLQRPLDLVLKRGSII QKASNTDGLTIIPEYDWKLFSEEWSATPGKGISAEIAFSKSSQDKLHGSSEAVPITDGNLGQSL DDTNDDLGAREPYIRTDPEFHRQWCNSM*(-) MTQTMIWEPESLISELIPSSIDNGAIQCEHGKVPASKVTSMKRLSSVAWQKLHSKYGGGPILNS DDFCMECLKDGAKSAVSADVYRERRASLKTLAEAALAGNCPDGPSYFISKTWLTHWLRRKNADI PSDGDNGPTSALRCCHGDFLPEHAPGAKRVSVPEILWLFLYQTVHEKKADDTVTFPSDSHPCET CSRELSDVASVEVNLRAVKLKQRQNHEKLISGKSFALHPGQKYYLVPSSWLSEWRAYITATGKN ISSLPEPQTLEAVARSLICEKHSRLLQRPLDLVLKRGSIIQKASNTDGLTIIPEYDWKLFSEEW SATPGKGISAEIAFSKSSQDKLHGSSEAVPITDGNLGQSLDDTNDDLGAREPYIRTDPEFHRQW CNSM*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |