Detail information of Zm00001d020157_circ_g.1


General Information
CircRNA Name Zm00001d020157_circ_g.1
ID in PlantcircBase zma_circ_009321
Alias zma_circ_0002777
Organism Zea mays
Position chr7: 96202681-96206241  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d020157
Parent gene annotation UBP26
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d020157_T027:6
Zm00001d020157_T019:6
Zm00001d020157_T014:6
Zm00001d020157_T030:6
Zm00001d020157_T038:6
Zm00001d020157_T036:6
Zm00001d020157_T040:6
Zm00001d020157_T042:6
Zm00001d020157_T032:6
Zm00001d020157_T011:6
Zm00001d020157_T023:6
Zm00001d020157_T028:6
Zm00001d020157_T003:6
Zm00001d020157_T047:6
Zm00001d020157_T046:7
Zm00001d020157_T049:6
Zm00001d020157_T018:6
Zm00001d020157_T017:6
Zm00001d020157_T009:6
Zm00001d020157_T002:6
Zm00001d020157_T026:6
Zm00001d020157_T048:6
Zm00001d020157_T021:6
Zm00001d020157_T034:6
Zm00001d020157_T004:6
Zm00001d020157_T001:6
Zm00001d020157_T008:6
Zm00001d020157_T044:6
Zm00001d020157_T007:6
Zm00001d020157_T013:7
Zm00001d020157_T025:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATTTCTGCCAAGCTACAGATGATAACCGCTTCATTGATGTGACTTTAGATGCTGGAACCTTT
CCATGTTCACATTGAATTGCACCATTGTCGATGGAActcgggatcagttctgatataaggctct
ctggctcccaaatcatcgtttgtgtcatcaagagactggcctagatttccatccgtaatcggca
ctgcttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGGGATCAGTTCTGATATAAGGCTCTCTGGCTCCCAAATCATCGTTTGTGTCATCAAGAGAC
TGGCCTAGATTTCCATCCGTAATCGGCACTGCTTCAGATGATCCATGCAGTTTGTCTTGAGAAC
TCTTGCTAAAAGCAATTTCAGCAGATATACCTTTTCCAGGTGTAGCACTCCACTCTTCAGAGAA
TAATTTCCAATCATACTCTGGGATTATGGTTAACCCATCAGTCTGAAAACATAGGATGATGATT
AATAATACTTTGTTTTCATCATGCATGGCAACTTGTAGTAGTAATAAAAATCCCAAATTATACA
GGCAGTTAGACAATGCAAAAACAAAAAGAAAATGATAAGGTAGCTGTTCGGCAGTGCAAGAAGA
GTAGAAAGCGGCAAAAGTATAATACAAGAGACAGTAACAGAGTGTAATGGTTAAGGCTTCCGAG
TAGCACCTCTAGATCCCGGGTTCGATCCCCCTCGAAGGCGAATTTCTGGCTTGGTTAAAAAAAA
ATCCCCTCGATGTGCCCACCGCTCCCAGGTTACTTCCTGCGCGCCACCCTCCCCGGTTAGGCCG
TTGCAGAGTGGGCGGTGACGGCCCGCTAGTGATGGGAGGCCAGGGTTCGAGGATTTTCTCGACC
GGGATCATGTTTCGGTCTCTTCTTAATATAATACCGGGAGGGCGGTCTTTCCCTCCTCGGCCGA
GTTTTTTTCAGTAACAGCCTCACGTTTCAGACCCAAGGGCCTATTTGGATGCTATAGCTTTCAA
AAACTACAGTTTTTAAAACACCTTGCTACATCGCACAGTTTTAGAGTACCAAAATATTTTACAG
CATTGTGAAATGAACAATGTGTTTCACAGTCTCGGAATTTAAGTTCACGCTTCCATATTAAAAT
TTTCTGTTAGGCATACTATTTCACTTCAGCCATGTTTCTTTCAAACAAATTAAATGGTAGTTAT
ATGTGCAAGGCCTAGTTTGAGAAGTGATGGTCAAATGCTCCAAACAAACTAATGATGAAATATA
TATTTTATGTTCAGAAGCATAGTAAGGAAAATTTGTGAAGAAAATGGACTTACATTTGATGCTT
TCTGAATGATGCTCCCACGCTTTAAAACAAGATCCAAAGGCCTTTGCAGCAATCTTGAATGCTG
AAAATTACCAATCCTCATGTTAAAAAAGAAAGTGCTTTATACACCTGATAACTAAAATTGGTAA
AAAGAAGTATAGTTAATCACAACCAACAGAAACACAGATATCTTATCAAGGCAAAAATTAATCC
ATAAACCATGTAAAATTCATATGCAAACATAGATTAAATTATTAAAAAAAACTCGACCTGTGGG
GTAAGATCACCCCTACGGCATTATATTAAGAAGACCTCTTGCAGGTCGAGAAAACCCCCAATGG
CCCCACCCATACACAGCGGCATCATAGCCCATATGTGGGAACGACCGAGACCAAGGCTGGGTCT
TAGACATATGCTTTGGCGTGGAACAGACAAGGGAATTTTTTTAACCACAACCTAAAATTCGCTC
CCACGGGGAGTCCCCAGGACCTGAGGAGTGCAACTCAAACCACCTAACCAACTCAACTAGAGGC
CATATTTGGGTCTAACTTAATGGATTGATGCAGTATACCACGCTACTCTGCCGCAAAATTGTAC
AATGCCGGCAATCAGGTTTTGTTACAATCCTGTTCCCCAGCTGATCATAATCTCTTCAGAAGTA
TGTTACAAACAATACATAATCTCAAATGTTCGGAGTTCAGACAAGAACGTCATTTGAAGTTCTA
ATGGGATCCCATTTGTTCTTGACAGAGTCTCACCTAAACTCTCAAATGACAAATATTAGAGTTT
AAGAACAAGACAAAACCAGTATGTGACATATTAGTTTACCTTTTCACATATAAGTGACCTGGCA
ACAGCTTCCAGAGTTTGAGGTTCTGGTAATGAAGAAATGTTTTTCCCAGTTGCTGTAATATAAG
CTCTCCATTCTGACAACCAAGATGAAGGAACCAAATAATATTTTTGACCAGGATGAAGCGCAAA
GCTTTTCCCAGATATCAACTTTTCATGGTTCTGTCGTTGCTTGAGTTTCACTGCTCTGGAAGTC
ATAAAGATGCATAAAAAATGCATATTAGATATAAATGTTTTAGTGCATAACTCAATATCTAGAA
TTTATTTTCTAACTTCATACCTAAGATTAACCTCCACAGAAGCAACATCAGACAATTCTCGGCT
GCAGGTTTCACATGGATGACTATCTGATGGAAAAGTCACTGTATCATCAGCCTTCTTCTCATGG
ACTGTTTGGTAGAGAAATAGCCAGAGGATCTCTGGTACAGATACCCGTTTTGCCCCTGGAGCAT
GTTCTGGCAGAAAATCCCCATGGCAACATCTTAAAGCACTTGTTGGTCCGTTATCCCCATCAGA
AGGGATATCAGCATTTTTTCTACGCAGCCAATGAGTCAACCTAGGAGTAAAAACAGAAAAAAAA
TCAGCATAACCATACCCGCAGCAGGTGTGCACACAACAGAGGGCTAATTCATGGTGAGATGTGC
TTAGTGCAAGGTTGAACAAATGACAAACCGCAAGGTAAACTTAAATCAGCTAAGGTTTAACAGT
TCATTCAAGAAAAACATAACAAAATGTAGAAAGAGGGATATTTAATCATGATCAGCTTTTTGAA
ATAACCTCTAAAAGGTTGAAATATAAACATAAAGTTGGGGTGTACATATAACATATCATGAATA
TTAATCTTGCATTGACACGCTGGTCTACAGTGCATGAACTCAAAAAAGAATCGAAGGGCTATAA
GGCGCACAGTTCATATAAAGGCAAGCAGTAGCAAAAAAAATCTCAATCATAGGGCAGACTCCCC
CTCAGGCTGTAGATGAGGGCAGAAATCCTAAGCACCAAAAATATTATCTTACACATATAGCAAT
AGACAAATACTCTGGATAGTTAGGCAAGAACTATTCCTTAATCCTTATCCGTTGTGGCATACAG
CTTATGCATAGTTAACTACAGCTCCAAAAGAGAACACAGATAACTATACAGAAGCAAGATCAGA
AATCAAGAGAAGGTTGCACTTCGCATACCATGTCTTTGAGATAAAGTAAGAAGGACCATCTGGA
CAATTACCAGCAAGTGCTGCTTCTGCGAGTGTTTTCAATGATGCTCTTCGTTCACGGTAAACAT
CAGCAGATACTGCACTTTTTGCCCCGTCTTTAAGACACTCCATGCAAAAATCGTCACTGTTCAA
TATAGGTCCCCCTCCATACTTGAATTATTGCAATGACAACCAAAGAAAAGTCGTCAATATTATG
ACACAATCATTACAATATGAGTGCAACAACTAATGTGATGCTTTGGACGTACAGAAAACCATTT
AACTTTAATGCAAGTCAAAATTATAGGAAGTGCAAACCAAGATCTAGGAAAGTTCCATACTTTC
GAATGTAATTTCTGCCAAGCTACAGATGATAACCGCTTCATTGATGTGACTTTAGATGCTGGAA
CCTTTCCATGTTCACATTGAATTGCACCATTGTCGATGGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.101333153
Functional Information
Coding potential Y
Potential coding position 96206237-96202749(+)
96206193-96202699(+)
96206179-96206214(-)
96202738-96206214(-)
Potential amino acid sequence MELGISSDIRLSGSQIIVCVIKRLA*(+)
MLEPFHVHIELHHCRWNSGSVLI*(+)
MKRLSSVAWQKLHSKYGGGPILNSDDFCMECLKDGAKSAVSADVYRERRASLKTLAEAALAGNC
PDGPSYFISKTWLTHWLRRKNADIPSDGDNGPTSALRCCHGDFLPEHAPGAKRVSVPEILWLFL
YQTVHEKKADDTVTFPSDSHPCETCSRELSDVASVEVNLRAVKLKQRQNHEKLISGKSFALHPG
QKYYLVPSSWLSEWRAYITATGKNISSLPEPQTLEAVARSLICEKHSRLLQRPLDLVLKRGSII
QKASNTDGLTIIPEYDWKLFSEEWSATPGKGISAEIAFSKSSQDKLHGSSEAVPITDGNLGQSL
DDTNDDLGAREPYIRTDPEFHRQWCNSM*(-)
MTQTMIWEPESLISELIPSSIDNGAIQCEHGKVPASKVTSMKRLSSVAWQKLHSKYGGGPILNS
DDFCMECLKDGAKSAVSADVYRERRASLKTLAEAALAGNCPDGPSYFISKTWLTHWLRRKNADI
PSDGDNGPTSALRCCHGDFLPEHAPGAKRVSVPEILWLFLYQTVHEKKADDTVTFPSDSHPCET
CSRELSDVASVEVNLRAVKLKQRQNHEKLISGKSFALHPGQKYYLVPSSWLSEWRAYITATGKN
ISSLPEPQTLEAVARSLICEKHSRLLQRPLDLVLKRGSIIQKASNTDGLTIIPEYDWKLFSEEW
SATPGKGISAEIAFSKSSQDKLHGSSEAVPITDGNLGQSLDDTNDDLGAREPYIRTDPEFHRQW
CNSM*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b