Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d020157_circ_g.1 |
| ID in PlantcircBase | zma_circ_009321 |
| Alias | zma_circ_0002777 |
| Organism | Zea mays |
| Position | chr7: 96202681-96206241 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d020157 |
| Parent gene annotation |
UBP26 |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d020157_T027:6 Zm00001d020157_T019:6 Zm00001d020157_T014:6 Zm00001d020157_T030:6 Zm00001d020157_T038:6 Zm00001d020157_T036:6 Zm00001d020157_T040:6 Zm00001d020157_T042:6 Zm00001d020157_T032:6 Zm00001d020157_T011:6 Zm00001d020157_T023:6 Zm00001d020157_T028:6 Zm00001d020157_T003:6 Zm00001d020157_T047:6 Zm00001d020157_T046:7 Zm00001d020157_T049:6 Zm00001d020157_T018:6 Zm00001d020157_T017:6 Zm00001d020157_T009:6 Zm00001d020157_T002:6 Zm00001d020157_T026:6 Zm00001d020157_T048:6 Zm00001d020157_T021:6 Zm00001d020157_T034:6 Zm00001d020157_T004:6 Zm00001d020157_T001:6 Zm00001d020157_T008:6 Zm00001d020157_T044:6 Zm00001d020157_T007:6 Zm00001d020157_T013:7 Zm00001d020157_T025:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.101333153 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
96206237-96202749(+) 96206193-96202699(+) 96206179-96206214(-) 96202738-96206214(-) |
| Potential amino acid sequence |
MELGISSDIRLSGSQIIVCVIKRLA*(+) MLEPFHVHIELHHCRWNSGSVLI*(+) MKRLSSVAWQKLHSKYGGGPILNSDDFCMECLKDGAKSAVSADVYRERRASLKTLAEAALAGNC PDGPSYFISKTWLTHWLRRKNADIPSDGDNGPTSALRCCHGDFLPEHAPGAKRVSVPEILWLFL YQTVHEKKADDTVTFPSDSHPCETCSRELSDVASVEVNLRAVKLKQRQNHEKLISGKSFALHPG QKYYLVPSSWLSEWRAYITATGKNISSLPEPQTLEAVARSLICEKHSRLLQRPLDLVLKRGSII QKASNTDGLTIIPEYDWKLFSEEWSATPGKGISAEIAFSKSSQDKLHGSSEAVPITDGNLGQSL DDTNDDLGAREPYIRTDPEFHRQWCNSM*(-) MTQTMIWEPESLISELIPSSIDNGAIQCEHGKVPASKVTSMKRLSSVAWQKLHSKYGGGPILNS DDFCMECLKDGAKSAVSADVYRERRASLKTLAEAALAGNCPDGPSYFISKTWLTHWLRRKNADI PSDGDNGPTSALRCCHGDFLPEHAPGAKRVSVPEILWLFLYQTVHEKKADDTVTFPSDSHPCET CSRELSDVASVEVNLRAVKLKQRQNHEKLISGKSFALHPGQKYYLVPSSWLSEWRAYITATGKN ISSLPEPQTLEAVARSLICEKHSRLLQRPLDLVLKRGSIIQKASNTDGLTIIPEYDWKLFSEEW SATPGKGISAEIAFSKSSQDKLHGSSEAVPITDGNLGQSLDDTNDDLGAREPYIRTDPEFHRQW CNSM*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |