Detail information of AT2G03340_circ_g.2


General Information
CircRNA Name AT2G03340_circ_g.2
ID in PlantcircBase ath_circ_012671
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1015044-1015994  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G03340
Parent gene annotation Putative WRKY DNA-binding protein
Parent gene strand -
Alternative splicing NA
Support reads 17
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03340.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAGATTGTTGTGATTGCTGCATATGAACATTATTGCCTTGAACTGCTTGTGCAGTGACTTG
TGCTAAAGCTTGTTGATGTGTCATACCAAATGTTCCctcggataaggatttcctttgactactt
tctgaccatacttgcgccacctatatccatcatctaagaggtcaacttcactcgtcgtttggac
aataatcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 848
Transcript exons: 1015044-1015205,1015309-1015994
CTCGGATAAGGATTTCCTTTGACTACTTTCTGACCATACTTGCGCCACCTATATCCATCATCTA
AGAGGTCAACTTCACTCGTCGTTTGGACAATAATCCTAGGCTCTGTCACAGTTCTATGCGATGA
AGCAACTGGTTCTGAAACCCGAACTTCTGTATTTCTTCGCTTGGGATCAGGCTCATCCTCATGT
CTTTCTCCCACACTAGTCTCTGCATTCCCAACCTCCTCGCTATCACTTGCTTCAGACATCTGCT
CTGTTGTTGTAACTTGGCTTGTTTCCTGGTCCCTCTTACTCTTGTTGAGACTGCTATTACTTGT
TTGAAACTGATTTGCAATATCAGAACTTTTACAACTCCCGTTATTGTTACCGCGCTTTTGAGGA
AGCTCATGATTGTGTTGACCCTTGTAGATGATTTCCGTTACTTGTCCATCGAGTGACCTCTCCA
CTTTCTTCTTGACAGGACAAGCTGGATGCGTACATTTGTAATAACTCCGAGGAAAATCGCTCCC
CTTCACTTGCTTCTGCCCATATTTCCGCCAGTTGTATCCATCATCAGCTGGTTTGTCAGCATTT
TGAGGCTGTGACCGATGCTCAAAGACAGATATTTCCGAAGTCTCTCTCTGACCCTGCGATGTTT
CTTGAACCGAGGCTCGAATCTGAGACCTAGGTGCAGAAGAAAATGATGGAATCTCAGTCAATGA
AGCTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTAGAAGAAGGATATTCAGATTGTTGTGATTGC
TGCATATGAACATTATTGCCTTGAACTGCTTGTGCAGTGACTTGTGCTAAAGCTTGTTGATGTG
TCATACCAAATGTTCC

Genomic sequence CTCGGATAAGGATTTCCTTTGACTACTTTCTGACCATACTTGCGCCACCTATATCCATCATCTA
AGAGGTCAACTTCACTCGTCGTTTGGACAATAATCCTAGGCTCTGTCACAGTTCTATGCGATGA
AGCAACTGGTTCTGAAACCCGAACTTCTGTATTTCTGCAACATTCAAAGATTGTTTAAATCTCA
TCAGAATAACCAAAACCACACAAGAGATGAATGTAAGAGGAACAGTAAAGTCTCATGAGTTTTT
CTTATTTACCTTCGCTTGGGATCAGGCTCATCCTCATGTCTTTCTCCCACACTAGTCTCTGCAT
TCCCAACCTCCTCGCTATCACTTGCTTCAGACATCTGCTCTGTTGTTGTAACTTGGCTTGTTTC
CTGGTCCCTCTTACTCTTGTTGAGACTGCTATTACTTGTTTGAAACTGATTTGCAATATCAGAA
CTTTTACAACTCCCGTTATTGTTACCGCGCTTTTGAGGAAGCTCATGATTGTGTTGACCCTTGT
AGATGATTTCCGTTACTTGTCCATCGAGTGACCTCTCCACTTTCTTCTTGACAGGACAAGCTGG
ATGCGTACATTTGTAATAACTCCGAGGAAAATCGCTCCCCTTCACTTGCTTCTGCCCATATTTC
CGCCAGTTGTATCCATCATCAGCTGGTTTGTCAGCATTTTGAGGCTGTGACCGATGCTCAAAGA
CAGATATTTCCGAAGTCTCTCTCTGACCCTGCGATGTTTCTTGAACCGAGGCTCGAATCTGAGA
CCTAGGTGCAGAAGAAAATGATGGAATCTCAGTCAATGAAGCTTGTTGTTGTTGTTGTTGTTGT
TGTTGTGTAGAAGAAGGATATTCAGATTGTTGTGATTGCTGCATATGAACATTATTGCCTTGAA
CTGCTTGTGCAGTGACTTGTGCTAAAGCTTGTTGATGTGTCATACCAAATGTTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.27103637
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017