Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G07840_circ_g.5 |
ID in PlantcircBase | ath_circ_001201 |
Alias | At_ciR3290 |
Organism | Arabidpsis thaliana |
Position | chr1: 2425432-2426306 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, find_circ |
Parent gene | AT1G07840 |
Parent gene annotation |
AT1G07840 protein |
Parent gene strand | + |
Alternative splicing | AT1G07840_circ_g.3 AT1G07840_circ_g.4 |
Support reads | 2/4 |
Tissues | leaf/root, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G07840.3:3 AT1G07840.2:4 AT1G07840.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.154263399 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2425731-2426303(+) |
Potential amino acid sequence |
MSMEDKTSKQERDAARKEKHFFRQATENTYMKDVLDDLEDRPEEIRDYYGVESNEQKRFMAQYE RQQKAEEELFTRAPRTKEDKKREKRLKSSSGLHELTENFYDDIKFLDKDGEKPRSFGRNKRGGP FKKRKIRPIDKKLQYQIQKLTTAGGPVTELAHSEGKGSCEAQKSEDLSNYKPKPDLLADKEDDQ EDDGVYRPPKFAPMSMEDKTSKQERDAARKEKHFFRQATENTYMKDVLDDLEDRPEEIRDYYGV ESNEQKRFMAQYERQQKAEEELFTRAPRTKEDKKREKRLKSSSGLHELTENFYDDIKFLDKDGE KPRSFGRNKRGGPFKKRKIRPIDKKLQYQIQKLTTAGGPVTELAHSEGKGSCEAQKSEDLSNYK PKPDLLADKEDDQEDDGVYRPPKFAPMSMEDKTSKQERDAARKEKHFFRQATENTYMKDVLDDL EDRPEEIRDYYGVESNEQKRFMAQYERQQKAEEELFTRAPRTKEDKKREKRLKSSSGLHELTEN FYDDIKFLDKDGEKPRSFGRNKRGGPFKKRKIRPIDKKLQYQIQKLTTAGGPVTELAHSEGKGS CEAQKSEDLSNYKPKPDLLADKEDDQEDDGVYRPPKFAPMSMEDKTSKQERDAARKEKHFFRQA TENTYMKDVLDDLEDRPEEIRDYYGVESNEQKRFMAQYERQQKAEEELFTRAPRTKEDKKREKR LKSSSGLHELTENFYDDIKFLDKDGEKPRSFGRNKRGGPFKKRK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |