Detail information of Os06g0131300_circ_g.4


General Information
CircRNA Name Os06g0131300_circ_g.4
ID in PlantcircBase osa_circ_029535
Alias NA
Organism Oryza sativa
Position chr6: 1675804-1675925  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circseq_cup
Parent gene Os06g0131300
Parent gene annotation Arginine decarboxylase, Chilling stress response (Os06t0131300-0
1)
Parent gene strand -
Alternative splicing Os06g0131300_circ_g.2 Os06g0131300_circ_g.3 Os06g0131300_circ_g.5 Os06g0131300_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   AC-GC
Number of exons covered Os06t0131350-00:1
Os06t0131300-01:1
Os06t0131350-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCAATGTGGAAGTGCAGGAGCTGGAGGCAGTCGAGCATACCAAGGGTCTTGAGCTTGGCGagt
agatctgcgcggcctccccgacgccatcgccgagcagagcagtggtcgggatctggga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 122
Transcript exons: 1675804-1675925
AGTAGATCTGCGCGGCCTCCCCGACGCCATCGCCGAGCAGAGCAGTGGTCGGGATCTGGGAGCC
AATGTGGAAGTGCAGGAGCTGGAGGCAGTCGAGCATACCAAGGGTCTTGAGCTTGGCG

Genomic sequence AGTAGATCTGCGCGGCCTCCCCGACGCCATCGCCGAGCAGAGCAGTGGTCGGGATCTGGGAGCC
AATGTGGAAGTGCAGGAGCTGGAGGCAGTCGAGCATACCAAGGGTCTTGAGCTTGGCG
Conservation Information
Conserved circRNAs NA
PMCS 0.419805669
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016