Detail information of Os06g0637500_circ_g.1


General Information
CircRNA Name Os06g0637500_circ_g.1
ID in PlantcircBase osa_circ_031470
Alias NA
Organism Oryza sativa
Position chr6: 25899801-25900062  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circRNA_finder, find_circ
Parent gene Os06g0637500
Parent gene annotation Similar to MYB transcription factor R2R3 type. (Os06t0637500-02)
Parent gene strand -
Alternative splicing Os06g0637500_circ_g.2
Support reads 3
Tissues seed
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0637500-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGACGGGAGTTCTTGGAAGTGGCTGTGGGCGCTGTCGTGGTTGAACCGCTGATCCGTCCCAGG
GAGCGAGAGGGAGAGCGAGGTGAAGGGATCCTCCTCcgccggcgtcgccgcacccggcgcggac
gccgacgctcgccatgtacttgtgcacctcggcgcggatcatctcctgcatcgcggcggcgaac
tccggggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCCGGCGTCGCCGCACCCGGCGCGGACGCCGACGCTCGCCATGTACTTGTGCACCTCGGCGCG
GATCATCTCCTGCATCGCGGCGGCGAACTCCGGGGTGAACGGGTACTGTGTCGTCGAGGCGGCG
GCGGCGGGGGGAGGTGGTGGTGGCGGCGAGGGGGAGGACGGGAGTTCTTGGAAGTGGCTGTGGG
CGCTGTCGTGGTTGAACCGCTGATCCGTCCCAGGGAGCGAGAGGGAGAGCGAGGTGAAGGGATC
CTCCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.237635051
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017