Plant Circular RNA Database

Detail information of Os06g0727200_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os06g0727200_circ_g.6
					
						ID in PlantcircBase
						osa_circ_032452
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 30946157-30946933  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0727200						
					
						Parent gene annotation
						
							Catalase isozyme B (EC 1.11.1.6) (CAT-B). (Os06t0727200-01);Cata
lase isozyme B (EC 1.11.1.6) (CAT-B). (Os06t0727200-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os06g0727200_circ_g.5 Os06g0727200_circ_g.7 Os06g0727200_circ_g.8 Os06g0727200_circ_g.9 Os06g0727200_circ_g.10 Os06g0727200_circ_g.11 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0727200-02:1
Os06t0727200-01:1

General Information
CircRNA Name	Os06g0727200_circ_g.6
ID in PlantcircBase	osa_circ_032452
Alias	NA
Organism	Oryza sativa
Position	chr6: 30946157-30946933 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0727200
Parent gene annotation	Catalase isozyme B (EC 1.11.1.6) (CAT-B). (Os06t0727200-01);Cata lase isozyme B (EC 1.11.1.6) (CAT-B). (Os06t0727200-02)
Parent gene strand	+
Alternative splicing	Os06g0727200_circ_g.5 Os06g0727200_circ_g.7 Os06g0727200_circ_g.8 Os06g0727200_circ_g.9 Os06g0727200_circ_g.10 Os06g0727200_circ_g.11
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0727200-02:1 Os06t0727200-01:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TGGCCCAAACTATTTGATGCTTCCTGTGAATGCACCAAAATGTGCATACCACAACAACCACCAC
GATGGCTCCATGAATTTCATGCACAGGGATGAAGAGggtaattttgatcttgttgggaacaata
tgcctgtcttttttatccgagatgggatgaaattccctgacatggtccatgctttcaagccaag
tccaaaga

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATGGGATGAAATTCC
CTGACATGGTCCATGCTTTCAAGCCAAGTCCAAAGACCAATATGCAGGAGAACTGGAGAATAGT
TGATTTCTTTTCACACCACCCAGAGAGCCTGCACATGTTCTCCTTCCTCTTTGACGATGTAGGC
ATCCCACTCAACTACAGGCACATGGAGGGTTTTGGTGTCAACACCTACACCCTAATCAATAAGG
ATGGAAAGCCTCACCTTGTCAAATTCCACTGGAAGCCTACCTGTGGTGTCAAATGCCTGTTGGA
TGATGAAGCTGTGACTGTTGGCGGCACCTGCCACAGCCATGCCACGAAGGACTTGACTGATTCT
ATTGCAGCAGGGAATTACCCAGAGTGGAAGCTTTACATCCAGACTATTGATCCTGATCATGAGG
ACAGATTTGACTTCGATCCTCTTGATGTCACCAAGACATGGCCAGAGGATATCATCCCCCTGCA
GCCAGTTGGACGGATGGTCCTGAACAAAAACATTGATAACTTCTTTGCAGAAAATGAACAGCTT
GCTTTCTGCCCAGCGATAATTGTCCCTGGAATCCATTACTCTGATGATAAGCTGCTCCAGACAA
GAATTTTCTCCTATGCTGATACCCAAAGGCACCGTCTTGGCCCAAACTATTTGATGCTTCCTGT
GAATGCACCAAAATGTGCATACCACAACAACCACCACGATGGCTCCATGAATTTCATGCACAGG
GATGAAGAG

Sequences
Splice junction sequence	TGGCCCAAACTATTTGATGCTTCCTGTGAATGCACCAAAATGTGCATACCACAACAACCACCAC GATGGCTCCATGAATTTCATGCACAGGGATGAAGAGggtaattttgatcttgttgggaacaata tgcctgtcttttttatccgagatgggatgaaattccctgacatggtccatgctttcaagccaag tccaaaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATGGGATGAAATTCC CTGACATGGTCCATGCTTTCAAGCCAAGTCCAAAGACCAATATGCAGGAGAACTGGAGAATAGT TGATTTCTTTTCACACCACCCAGAGAGCCTGCACATGTTCTCCTTCCTCTTTGACGATGTAGGC ATCCCACTCAACTACAGGCACATGGAGGGTTTTGGTGTCAACACCTACACCCTAATCAATAAGG ATGGAAAGCCTCACCTTGTCAAATTCCACTGGAAGCCTACCTGTGGTGTCAAATGCCTGTTGGA TGATGAAGCTGTGACTGTTGGCGGCACCTGCCACAGCCATGCCACGAAGGACTTGACTGATTCT ATTGCAGCAGGGAATTACCCAGAGTGGAAGCTTTACATCCAGACTATTGATCCTGATCATGAGG ACAGATTTGACTTCGATCCTCTTGATGTCACCAAGACATGGCCAGAGGATATCATCCCCCTGCA GCCAGTTGGACGGATGGTCCTGAACAAAAACATTGATAACTTCTTTGCAGAAAATGAACAGCTT GCTTTCTGCCCAGCGATAATTGTCCCTGGAATCCATTACTCTGATGATAAGCTGCTCCAGACAA GAATTTTCTCCTATGCTGATACCCAAAGGCACCGTCTTGGCCCAAACTATTTGATGCTTCCTGT GAATGCACCAAAATGTGCATACCACAACAACCACCACGATGGCTCCATGAATTTCATGCACAGG GATGAAGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.798705792

Conservation Information
Conserved circRNAs	NA
PMCS	0.798705792

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							30946185-30946930(+)
30946927-30946211(+)
30946236-30946402(-)
30946352-30946845(-)
						
					

						Potential amino acid sequence
						
							MPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPLNYRHME
GFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEAVTVGGTCHSHATKDLTDSIAAGNYPEW
KLYIQTIDPDHEDRFDFDPLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVP
GIHYSDDKLLQTRIFSYADTQRHRLGPNYLMLPVNAPKCAYHNNHHDGSMNFMHRDEEGNFDLV
GNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPLNYR
HMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEAVTVGGTCHSHATKDLTDSIAAGNY
PEWKLYIQTIDPDHEDRFDFDPLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQLAFCPAI
IVPGIHYSDDKLLQTRIFSYADTQRHRLGPNYLMLPVNAPKCAYHNNHHDGSMNFMHRDEEGNF
DLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPL
NYRHMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEAVTVGGTCHSHATKDLTDSIAA
GNYPEWKLYIQTIDPDHEDRFDFDPLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQLAFC
PAIIVPGIHYSDDKLLQTRIFSYADTQRHRLGPNYLMLPVNAPKCAYHNNHHDGSMNFMHRDEE
GNFDLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVG
IPLNYRHMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEAVTVGGTCHSHATKDLTDS
IAAGNYPEWKLYIQTIDPDHEDRFDFDPLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQL
AFCPAIIVPGIHYSDDKLLQTRIFSYADTQRHRLGPNYLMLPVNAPKCAYHNNHHDGSMNFMHR
DEE(+)
MKRVILILLGTICLSFLSEMG*(+)
MDHVREFHPISDKKDRHIVPNKIKITLFIPVHEIHGAIVVVVVVCTFWCIHRKHQIVWAKTVPL
GISIGENSCLEQLIIRVMDSRDNYRWAESKLFIFCKEVINVFVQDHPSNWLQGDDILWPCLGDI
KRIEVKSVLMIRINSLDVKLPLWVIPCCNRISQVLRGMAVAGAANSHSFIIQQAFDTTGRLPVE
FDKVRLSILID*(-)
MPTSSKRKENMCRLSGWCEKKSTILQFSCILVFGLGLKAWTMSGNFIPSRIKKTGILFPTRSKL
PSSSLCMKFMEPSWWLLWYAHFGAFTGSIK*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	30946185-30946930(+) 30946927-30946211(+) 30946236-30946402(-) 30946352-30946845(-)
Potential amino acid sequence	MPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPLNYRHME GFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEAVTVGGTCHSHATKDLTDSIAAGNYPEW KLYIQTIDPDHEDRFDFDPLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVP GIHYSDDKLLQTRIFSYADTQRHRLGPNYLMLPVNAPKCAYHNNHHDGSMNFMHRDEEGNFDLV GNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPLNYR HMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEAVTVGGTCHSHATKDLTDSIAAGNY PEWKLYIQTIDPDHEDRFDFDPLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQLAFCPAI IVPGIHYSDDKLLQTRIFSYADTQRHRLGPNYLMLPVNAPKCAYHNNHHDGSMNFMHRDEEGNF DLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPL NYRHMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEAVTVGGTCHSHATKDLTDSIAA GNYPEWKLYIQTIDPDHEDRFDFDPLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQLAFC PAIIVPGIHYSDDKLLQTRIFSYADTQRHRLGPNYLMLPVNAPKCAYHNNHHDGSMNFMHRDEE GNFDLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVG IPLNYRHMEGFGVNTYTLINKDGKPHLVKFHWKPTCGVKCLLDDEAVTVGGTCHSHATKDLTDS IAAGNYPEWKLYIQTIDPDHEDRFDFDPLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQL AFCPAIIVPGIHYSDDKLLQTRIFSYADTQRHRLGPNYLMLPVNAPKCAYHNNHHDGSMNFMHR DEE(+) MKRVILILLGTICLSFLSEMG(+) MDHVREFHPISDKKDRHIVPNKIKITLFIPVHEIHGAIVVVVVVCTFWCIHRKHQIVWAKTVPL GISIGENSCLEQLIIRVMDSRDNYRWAESKLFIFCKEVINVFVQDHPSNWLQGDDILWPCLGDI KRIEVKSVLMIRINSLDVKLPLWVIPCCNRISQVLRGMAVAGAANSHSFIIQQAFDTTGRLPVE FDKVRLSILID(-) MPTSSKRKENMCRLSGWCEKKSTILQFSCILVFGLGLKAWTMSGNFIPSRIKKTGILFPTRSKL PSSSLCMKFMEPSWWLLWYAHFGAFTGSIK*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0727200_circ_g.6

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