Detail information of BGIOSGA025284_circ_g.3


General Information
CircRNA Name BGIOSGA025284_circ_g.3
ID in PlantcircBase osi_circ_007068
Alias 7:4423899|4425364
Organism Oryza sativa ssp. indica
Position chr7: 4423899-4425364  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA025284
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA025284_circ_g.1 BGIOSGA025284_circ_g.2 BGIOSGA025284_circ_g.4 BGIOSGA025284_circ_g.5 BGIOSGA025284_circ_g.6 BGIOSGA025284_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA025284-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTAATAATTATTCTAGTACCGTTCAGTTTTACACAAAATTGGAAGAAAAACGCAAGGCCTTG
GAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAGtccaagcggcaaaggggttgtagaaatg
tccacggatgatgaatcagattgtgtggttatatgtcccccaaatgggaaagctggtcatacag
aagttatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTGTGTGGTTATATGT
CCCCCAAATGGGAAAGCTGGTCATACAGAAGTTATGAGTGGCAGGCATGATGAAGATTCTTCAA
GAGGGCAAGAAACCCCTTCTACTATAGACTCACATATGAATGGGAATGTCCAGGATGGAGTGCC
TGCAGATCAAGATGTGCTGAAGCTGGTTGATCAGCAGAAGTCTTCTCTTCCCAGTTCACCAATA
AACCATGGTATAGCTGAACAGGAAGAGTCAAACCACACTGTTCCTCAGCCATTTGCTCCTGCAA
CTGAAAGGGAGGATTCTGGAGAAGGAGATTGTACTCCAGTGCCTCATCCCACCAGCAACGGTGA
AAAACTCTCTGATAAAAGTAGCACCTCGCTGGCAAGTATGGCGAAGAAGGTCTGACATACTCTA
TTTCACATTGTATCATATATGTTTTATCTGCTTTGTTGTTGCACAATCGCCTGAATACTATTTA
ATTTTGGAATAAATGTCATGATGCATCATTTTGTTGGTATTATCTCAGTAAATTTCTGTATTCT
TTTAGCTTTAACCTTCAGGTATGGGTCATCTATCACTTGAAATGGTGCAACATATGCTTTGATT
TGGCAATTGGGATGATATTTGGAAGATCCTACACAGTTATCTAAATAAGCCACAATTTGTTGCA
TCAACCTGAACCCCCTATGTACACAAGAAAATTTTTATTAGTTTCTTTTCTGTTTACTTGAGTA
TGCCTGTGACTGCAGTTCTGTTTGGCTGGCATAAACTGTAGTAAGCTCTATTGAGATGAAATAA
GCCAGTTCTATTGACAATATTTTCCATGGTTATGGATTGCAGAGTCCATCAGTGACACCCAGGA
AGCCTCTGCAAGCTGACAGTACTTCCCATAGTCACGAAGATGATTCATATTCGGTTACTTCGTA
TCCTTTCAGATATTGACTTGATTTCTCATGTGTGCCTTATTCTTCGCAGCCACACCTACACTAT
TCATAATAGCTACAATTGGGATATAGCTACATGCTTTGAACATTTTGTTCCTTGAATTACTAAA
ACACAGAAAATTTGTCTAACTTTTTCTTTAATGTCTTCAACTCTTCATAACTGGTGGAAAACTA
GAAATATATCATGTTCTCTTCATTTCTATTGGGCTTTCCTGAGCTTCATTCATCCAGAACTGTA
ACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTTGCACCTACTTTTATATGTG
GTAATCGTCTTGAGAAGAGGGGAGAGGTACGTATTTAATTTCATCATACTGTAGAGAAATGGCT
TTGTAAGTTAAAGGGGACAGCATTGTAATAATTATTCTAGTACCGTTCAGTTTTACACAAAATT
GGAAGAAAAACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAG
Conservation Information
Conserved circRNAs osa_circ_033029* osa_circ_033028
PMCS
Functional Information
Coding potential Y
Potential coding position 4423925-4423934(+)
Potential amino acid sequence MSTDDESDCVVICPPNGKAGHTEVMSGRHDEDSSRGQETPSTIDSHMNGNVQDGVPADQDVLKL
VDQQKSSLPSSPINHGIAEQEESNHTVPQPFAPATEREDSGEGDCTPVPHPTSNGEKLSDKSST
SLASMAKKSPSVTPRKPLQADSTSHSHEDDSYSKYIMFSSFLLGFPELHSSRTVTSARTGKIKK
TTVPVAPTFICGNRLEKRGEFYTKLEEKRKALEEEKLEAEARKKSKRQRGCRNVHG*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021