Detail information of BGIOSGA014758_circ_igg.1


General Information
CircRNA Name BGIOSGA014758_circ_igg.1
ID in PlantcircBase osi_circ_014547
Alias Chr04:25897794_25900405(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23970623-23973234  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACATTTTTGCTGGTCATTCCCGGTACTCAGGTCAAACAAATTGATCACTGCCTTCTTATTAC
AAAGGAAGCCTCAGAGGATAACAACATTGATGAATCcttttgtagaacagggagcatgattggt
ggaattatcagcttcatccttgcaaaaagccatttgttcatcaggaccaagattgtgatcagac
tgcggcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTGTAGAACAGGGAGCATGATTGGTGGAATTATCAGCTTCATCCTTGCAAAAAGCCATTTG
TTCATCAGGACCAAGATTGTGATCAGACTGCGGCACCATGTGCCCGATACATCCAAATATCTCG
CCTGAGCTATCAGATGAGAGGGAAGTTTTCTCTTTTGTTGGCCTTTTATTGCCTGGGAAGAAAA
AACTTGATATTTTCCCCGTGAAAGATAATTTTGCTCTACCTGACTTTGTAAACACCTTCGGAGT
CCCTTCAGAATTTGCAGATTGAGCATTCACTGCTACGTTGTCAAATATAGATGAAGACACTGGG
ACAGATTTTGATTTTGCTAAATTCCTTGGAGAGCTCTTCCCATTTTCATCGTACTCTCTTAAAG
TAGATTTGCATGCATCTTTCATGGCCAACTCATTTTCTGTGCCACTTGACCGGTTGCTTGAAAC
AGAAATTATCCCAGCAACAGCTTCTTCTTTCTTAGCTACTTGAAGGGAGAGCATCTCACCCAAG
GTGGTTGAGCTCCTTCGCAAAGGTACTTGTTCTTGATTGATCTCATTGTATGATACCATTGCCC
ATCTCTCTGAAAGCCGTTTTTTGGCTTCCCTGATCACAGATGACTCAGGTGAATGTGAATGGGC
CCTGCTAAAAATAGAGGCTGAGTGAGGACTGTTGTGTCTTCTGATGTAATCCCATGAATGTCGC
GACATTGGACTGACTGCATCTGAGTCACTTGGGCTACCTCCTTCATCAATGTAGTCAACTTCTG
ACCCACTGAAAGAGCTTTCATCTCCACCATACCCATTTGAATATGTGGATGATATCAGGGATTC
GTCCCGCCGATGACGACTCTCTGGCATGTGCTGAACCGAACCATGCAGTAATTCCCTAGATCCT
AGGATGGATGCATCATCTTGTAAACCTCCATGGAAGTCGATCCGCCGAGTTTGTTCAGATGGAG
CTGCTCGGGCAGTTAGCCTGGCTCCTGTTCTATTAGGCTTCCCAGGGCTAGGCTTTAGGACCAC
TATCCTAGTTGACTTGGAGAAGTTGTCATCTGCTGAGTAAGATCTCTGGTGAGTCTTTCCCATC
ACAAGTTCATTTTCTTCATTAATAACTTGGTGTGTTCTGGTTTCTCTTATTCCATTGTTCTCAA
CAGATTTGATTGGCTTCAACACTGTAATACGCTTCGTCGGAGGCGGTGCAGGCGTTGTGTCAAG
TCCATCGAGCTGCTTCAAGAAAGCAGGGCTTGGTTCTTCAAGAAACTTCAGAAACAACTCCCTG
TTTGAACTTAGAACCTCAAGAGCTTCTTGAAACTGCTTTGAATGGATGAGATTCTCATTTGTGG
CAAGGCGTTTTGCTTCCATGAACTTCTGTCGAACAGCTTCGATCCTAGTGTCACTCTTGTTCCC
AGAAGATCTTTCCCAAGGAAAATTTTGCCCCAGAATATGATGTCTCTTTAATGGATCTTCAGAG
ACTTCGTACACATCCTTAAATTCAACTGTCTCTTTGGGGCCTATGTGTATGTTTGGTGTTGTCC
TGCTGTAATGCTGCTCTTGCTGTTGTTGGGGCCTGTTTGTTGCTGCCAAATTATCAAGTGAATG
ACTTCTCCGCAAATTTCTTCTAGAAGATTGTAATGCTGGTTCTTTAGCAGGTAGATCATCATCA
AGCCCCATTAGTCTGGCAACGACACTAGGTGGCTTCCTCTTTGATTCCACTCCTTTGGACATCT
CCATTGCTACTAATCTGTTCATTGGAGATATGGTTGATTTGTTGCTTGAAGAATTCCTAGTACT
AGCTACTACCTGCTGCAATGAATACTATATTAGAAAAAAAAATGAAGACATACTTTCTGAAATT
TACAAAATTGTGTAAGTGCTGTCCAGATATATATTTAGAAGGACAATCTGACACCTACGATAAA
TTGAAATTACATATGCTAGAATAGGGCAAATGACATGATACTCACTAATTTGTCCTCTACACAA
CCTATTTTGGGATCAACAGTTCTATTGACATCTTGCCGGCTTTTATGAACTCGAGAGCCTGAAA
GATGCAAGCTGAACAATTAACATTAGGCAGAAAACACTTATGTCTATCAATACAAACTAACAAA
TAAAGAACACAGTCAGTTTGATTTTTAAGGTCAGTGTCTTGCAACAAAAATAGCAAGAGCTCTT
TTGAATTATTTTCGAATCCAAGAAGAGGAAAACATCCAGAAAGAAAAGACAAATGTGTCATCAT
CTACAAACAATCAAACATGACATTGTCTAAAGGGAGACCACCATCTAACATTATGCAAATGAAT
CATTATTCAAACAATGCCAATGCCATCTAGCCCGTCTATCACAAGTAACTCTAAAGTATAAATT
CATATGCATTATGAAAGCAAAATCAGGAGTTGCCGACCCGGCGAAAAAAAGCAAAATCAGGAGT
TGCAGATCACTTGCTTAAGCAGCACTTCAAAGAAAAAGTGGAAGAAATTTTTGTACCATCTCTG
TGAGTTCTATCAGTTAGCACATTTTTGCTGGTCATTCCCGGTACTCAGGTCAAACAAATTGATC
ACTGCCTTCTTATTACAAAGGAAGCCTCAGAGGATAACAACATTGATGAATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021