circRNA
Detailed infomation of each circRNA
Detail information of Zm00001d006323_circ_g.3
| General Information | |
|---|---|
| CircRNA Name | Zm00001d006323_circ_g.3 |
| ID in PlantcircBase | zma_circ_007345 |
| Alias | zma_circ_0000895 |
| Organism | Zea mays |
| Position | chr2: 204606023-204606673 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d006323 |
| Parent gene annotation |
Histone-lysine N-methyltransferase ATX4 |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d006323_T002:3 Zm00001d006323_T134:3 Zm00001d006323_T067:3 Zm00001d006323_T013:3 Zm00001d006323_T140:3 Zm00001d006323_T110:3 Zm00001d006323_T018:3 Zm00001d006323_T025:3 Zm00001d006323_T164:3 Zm00001d006323_T080:3 Zm00001d006323_T042:3 Zm00001d006323_T053:3 Zm00001d006323_T026:3 Zm00001d006323_T074:3 Zm00001d006323_T058:3 Zm00001d006323_T146:3 Zm00001d006323_T086:3 Zm00001d006323_T141:3 Zm00001d006323_T015:3 Zm00001d006323_T123:3 Zm00001d006323_T049:3 Zm00001d006323_T161:3 Zm00001d006323_T057:3 Zm00001d006323_T138:3 Zm00001d006323_T152:3 Zm00001d006323_T135:3 Zm00001d006323_T119:3 Zm00001d006323_T127:3 Zm00001d006323_T172:3 Zm00001d006323_T173:3 Zm00001d006323_T100:3 Zm00001d006323_T112:3 Zm00001d006323_T118:3 Zm00001d006323_T004:3 Zm00001d006323_T034:3 Zm00001d006323_T158:3 Zm00001d006323_T081:3 Zm00001d006323_T022:3 Zm00001d006323_T065:3 Zm00001d006323_T088:3 Zm00001d006323_T114:3 Zm00001d006323_T149:3 Zm00001d006323_T062:3 Zm00001d006323_T030:3 Zm00001d006323_T091:3 Zm00001d006323_T059:3 Zm00001d006323_T047:3 Zm00001d006323_T070:3 Zm00001d006323_T038:3 Zm00001d006323_T108:3 Zm00001d006323_T136:3 Zm00001d006323_T064:3 Zm00001d006323_T105:3 Zm00001d006323_T101:3 Zm00001d006323_T137:3 Zm00001d006323_T077:3 Zm00001d006323_T129:3 Zm00001d006323_T133:3 Zm00001d006323_T103:3 Zm00001d006323_T051:3 Zm00001d006323_T001:3 Zm00001d006323_T044:3 Zm00001d006323_T169:3 Zm00001d006323_T072:3 Zm00001d006323_T063:3 Zm00001d006323_T028:3 Zm00001d006323_T096:3 Zm00001d006323_T084:3 Zm00001d006323_T016:3 Zm00001d006323_T003:3 Zm00001d006323_T039:3 Zm00001d006323_T155:3 Zm00001d006323_T010:3 Zm00001d006323_T055:3 Zm00001d006323_T131:3 Zm00001d006323_T166:3 Zm00001d006323_T097:3 Zm00001d006323_T005:3 Zm00001d006323_T122:3 Zm00001d006323_T069:3 Zm00001d006323_T102:3 Zm00001d006323_T008:3 Zm00001d006323_T020:3 Zm00001d006323_T060:3 Zm00001d006323_T094:3 Zm00001d006323_T139:3 Zm00001d006323_T098:3 Zm00001d006323_T168:3 Zm00001d006323_T157:3 Zm00001d006323_T171:3 Zm00001d006323_T148:3 Zm00001d006323_T163:3 Zm00001d006323_T037:3 Zm00001d006323_T031:3 Zm00001d006323_T174:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.040547798 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
204606057-204606670(+) |
| Potential amino acid sequence |
MTRALKTKNILKSLLQGLMNLERSEYYVDSLGNASSECTSLQNPVDSAHGDNIMNAKNITSNSW TSGKYYSSLLGPQPMQWVHMVCGLWTPGTKCPNDTTMSAFDVSGASPAKRNTACSICDRTGGSF VKCRAVNCLVFFHAWCAHQRVCVLCGYGGGAMTRALKTKNILKSLLQGLMNLERSEYYVDSLGN ASSECTSLQNPVDSAHGDNIMNAKNITSNSWTSGKYYSSLLGPQPMQWVHMVCGLWTPGTKCPN DTTMSAFDVSGASPAKRNTACSICDRTGGSFVKCRAVNCLVFFHAWCAHQRVCVLCGYGGGAMT RALKTKNILKSLLQGLMNLERSEYYVDSLGNASSECTSLQNPVDSAHGDNIMNAKNITSNSWTS GKYYSSLLGPQPMQWVHMVCGLWTPGTKCPNDTTMSAFDVSGASPAKRNTACSICDRTGGSFVK CRAVNCLVFFHAWCAHQRVCVLCGYGGGAMTRALKTKNILKSLLQGLMNLERSEYYVDSLGNAS SECTSLQNPVDSAHGDNIMNAKNITSNSWTSGKYYSSLLGPQPMQWVHMVCGLWTPGTKCPNDT TMSAFDVSGASPAKRNTACSICDRTGGSFVKCRAVNCLVFFHAWCAHQR(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |
