Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018859_circ_g.9 |
ID in PlantcircBase | zma_circ_009215 |
Alias | zma_circ_0002745 |
Organism | Zea mays |
Position | chr7: 7553312-7554336 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d018859 |
Parent gene annotation |
Ubiquitin carboxyl-terminal hydrolase 13 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d018859_T042:2 Zm00001d018859_T030:1 Zm00001d018859_T031:1 Zm00001d018859_T003:2 Zm00001d018859_T001:2 Zm00001d018859_T033:1 Zm00001d018859_T028:1 Zm00001d018859_T008:2 Zm00001d018859_T013:2 Zm00001d018859_T005:2 Zm00001d018859_T011:2 Zm00001d018859_T041:2 Zm00001d018859_T022:2 Zm00001d018859_T010:2 Zm00001d018859_T026:2 Zm00001d018859_T020:2 Zm00001d018859_T002:2 Zm00001d018859_T038:2 Zm00001d018859_T015:2 Zm00001d018859_T032:1 Zm00001d018859_T017:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.133187545 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7553382-7553360(+) 7554266-7553417(-) |
Potential amino acid sequence |
MVQVNLDIGGSSICWFSTVAAGSAGTTSIGCAPLGNSRCGPYGTSTSSSSCCCTCSLRQQRFRS TASSC*(+) MEVVPAEPAATVENQQIEDPPISRFTWTIENLSRVSTKKLYSEIFVVGGYKCSSMRKRRCWCRM ARTWSCPMERSQWKLCLLSQLLLWKTNR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |