Detail information of BGIOSGA023705_circ_g.1


General Information
CircRNA Name BGIOSGA023705_circ_g.1
ID in PlantcircBase osi_circ_017494
Alias Chr07:28992706_28997597(MH63RS2), Chr07:28992706_28997597(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 26913105-26917998  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ, find_circ
Parent gene BGIOSGA023705
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA023705_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA023705-TA:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGCAGCTGTAACTCCCGTGAAACATGAATTTTAGAGGAGCGCCACATGATTTCCTTGAAGAA
CTTGTGTGCATAATTCATAGCTACCATGTCCCCCTTcctttgttccatatgaaccttggacaga
aatagcgctttctgccaaatcctcaatttctctatcagcatttcctctctggttttcaactaca
aaagcaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTGTTCCATATGAACCTTGGACAGAAATAGCGCTTTCTGCCAAATCCTCAATTTCTCTATC
AGCATTTCCTCTCTGGTTTTCAACTACAAAAGCAACATTTTCAAGATCTGTACGTTGACGGCAA
GTAGGGCACATAATCCATTTTTTGCTCCTCCCAAAGTGGGCTGCAGCTTGTTCTGTCATGTAAA
GACAGCCTGAGAGCAGTGAATAGATAAATTCAGTAAAGATCAAGAGTTTAGTATACATCAGATG
AATAAAATTGTCATGGATAGATCAGCATGGAACTTGGAGTTGGAAAATTGAAAGATCAACAGAA
CCAATCTATAATACAAAACATAGGCACATGTGTTGCATGCTTACAACAGAACAGAAACAGTAGA
AACATTAACTACGTGACAAGTTGTTTTTCTTCCACTGAAATAAATTTAAGAAAAATAGCATAAA
AGTACAAGTTGTAAATAAAATAGAAGACAACTCTTGGGATACTCACACTTGCAGCAAACGAAAT
GGCCACATTGGAAAACCATTTTCTGGTCAAAGAACTTCTCCTGACAAATTGGGCATGGTTCATT
GATAATATCAGAAGCAGTTTGCCCTGTGGCAGGGATGGAAGTTGCTATAGCAACACTGTTGCCT
GACTCGGGCAGTGATTCACCATGCTTGCCCAGTGGTTTCTTGTTGGATAGCACCAATCCCTAAA
AGTAAATAAAATACAATGAGAATTTCTAAAATAACAGATAAGATGGGTTATGGATTCTTATGGG
AAAATTAAGAAAGATAATGCCTGATAATAAAGTAGATTCTGTATCGAAAGGAGGCAGTTATATA
CTTTTATCCAAGTAAATGATGAGAGCTGTCCAGGTGGAAATTATACAGTTGAGCAGTGTTTAGA
AATAAATGGAATGTAGAATATGTAAAATAGAATATCAAATTCACGGCAGAGTGCAACCCATGAT
AGCAAGTATTGACCTTTAAGTATCTGAGTTGGCCTCTTATACGAGCTAAAGATGACAAAGACAA
GAATTTTTCACTTGTAAACTGCACATTGTATGGTATAAGCTCTTCTCTAGTAACAATATTGACT
GCACTGGGTTCATCATCTTTCTCCTTGAGCTGCAGGCGTGAGAGAGACATCTTGATCTCATCAT
GGGCACGCAGTAACTGGGTCTGTGCTATTGATAGATTCCTTGCTTGAGAGAACTCCTTGCGCAT
AGCCTACATTAGCACATAATGGTCAGACAATATCCTATCTCGTGGTATTTTTGAACCTTCACAT
TTTAGACTAAAACATATGGATCACTTAGTAAACAAAGATTATAAGGTTTGACATGTGGAAAGGT
TCCTAATTAGATTCACCTCCATCTTTCCATATGTTCTCTAGACATTACAAATGCAAGTGATCTA
ACAAGACAATAGTAAATTTTACATTGATGCAGGTTAATGATAACAAAAAGAAGTTCTGCTGCAG
GGGGGAAAATACCAAGACACAGTAAAATAGAGATAAGATACTCATGTTTTATCATTCCGACTCA
ATAATAATGTTTTGTTTGCTTTTAATTTACTACAAAAATCAAGACACAGCAAAATAGAGATAAG
ATGCTCATGTTTTATCATTCCAACTCAAATAATAATGTTTTATTTGCTTTTAATTTACTACAAA
AATCAAGACACAGCAAAATAGAGATAAGATACTCATGTTTTATCATTCCAACTCAAATAATAAT
GTTTTATCTGCTTTTAATATACTACGGTGATAAAATTTATTTCAGCAACTGCAATTACCAGCTA
AAACATGTCAGAAGAGAAGGCAGTGACATTAAAAATATTTTCTGTACCTCAAAAAGCAGCAAAT
TCTTTTTAGCAATTTTAGCAGATTGCTCTCCCATTATTGTCTTTGAGTGGGTTAGAATAACCCT
TAAGGAAGTCTCAATTCGAGAAGGATGCCTGTAGACCTGTAAACAGCAACCATATAAAAACATA
AAAATGGTAGATAAAACATAAATGGATCACTATATATGCACTTTTAATTGCCATAGAAAATCCA
AGAAATTTATAAACCATTTCAAAGTAATTTCCGACAAATGAAAAGTTGAACGAAATCATATCTG
ACACTTGATAATATACAAAAGCGAGTTGATCTATACAGGCAGTAGTGCAGTACAGTCTTTTTTG
ACAGAAATAAGTCATTAACCATTTCAATTTGATAAATAGAAATAACCTAGTTACAGGAACAGAG
TGGTGGGGGCGAAAGTCCAGGAACCAGAAGCAAATAAGATGTGGTCTAACTACCAGATCTCTAG
TAGTTTAGACTAAGAAGGGAAGTTTAAAAACAAAAATATAAGACCCCCAGGCACAGGTATGGAT
TAGTCAAATGAAAGCCTGAAAGGTGACATCTGCTTAGCTATATTTCAATATAAAAGACATGACA
AGATGATACCAGAAAACCTTCTCGAGCAGATCTTGGATTCTTATTGTCGTCACCAGGTTCAGAT
CCCTCGTTAGTTTTAGTATTACGAAAAAACTGATTCAACTCATATTTTCGCCTTTGCAAGTCCC
TTGCTTCCTCTACTGAGGCAATAACAGAATCATTATTTGATTTCTTAACAAGAAACAGACGTGC
TTCATACCCCTACAAGAATTGATGAAATAAATGCATGATCAACAAGCAGAAGTAGGGAGGTACC
TCAAAAAACATTAGCATATAAAACTACCTGAAACAGATCATCCAATTCACATTGGATGCATAAA
GAACCATTACCATCATAGCAATTTGGACAATATCGCTGACACTCAATGTCTTCATCCTTTGGGC
TATCCATTGTTTTGTCAAGTTCTAAAAGTCTGTCCATCACTTGTTGCCTTGAACTTTGCAGAGA
ATCAATACCAGTTTGAATGGTATACTTCAACCCAGCAATGGTTTGAACCCTAAGCAGAGAACAA
GACAACCAAGTTATCCATCAATTGCCATAAAAGGTTTTAATTTATACAACCTCTAAACAATTAA
ATCACTGCAAACAGGAAGGACAACAAATTGAATGGACAAACTGAACATAATTTTCTGCTGACCT
GGAAGACATCCCTGTTGAACCCAAGCCAGTGGTGCTTTTATTGGAAGAAATATCAATCTTCCTA
ATGAGCTCATCAGCAGAATCCTTGTTCTGTTCAATGCAATCCAAAGCATACAGCCACCAATTCA
TATTTTGATTCTGTAACTCCATACTGAGAGTTGAGACCTAGAAGCAGAACAGCAGAATTTCATT
ATATAAATAGTGATGACTTCTACATTCTACAACACTGAAAATACTTAGGTGGAGAGATTATTGT
TATAGAGCATTACAAAGGAGACAGAGAACATTCCAAAGGGGGAAGCATGGAATAGGAGACGAGA
AAATAAATAAGTTAAAATCGCTAGGTGCAACTAAAATATAGCAGTAAAAAAACAACCTCTGTGA
ATGATGCACTGAAATCTTTCTGTGCTATTAGTAGCTTTGAAGTAAAAACTGACAGATACTTTTC
TCTGATTGAATTGCAAGTATTTTTCAAACAACCATCAGCTAAGCATACAGATGACGTGTGGCAT
CCAGAATCATTCTCTACATCCATCTCTTCACTTCCACATACTTGTGTATTGATGTTTTTGTCTT
CCTTGGATGTTTCTGGATTATCAGTCATCAAACTTGACCTGCTATTCTCACAAATTTTCTTTCG
CTTTATGCCACACAGACCTGAGTCAGCGGGACTAGTTTCCTTTCTTTTTCGCGCACCATGGACT
TCAGAGGTTTGTTCTTTTAGTGGGCATTCTTGCAAATCCTCAGAACTAGCTCTGAGCAGCTCCG
CAAGATTGTGGTTGATATGAAGATTCAACAAAGGGTCAACACGGAAATCATCAAAATTTTCACG
GGCCAAAGCTAGTGCTTCTTTATACAGAGAGATGGCCTCTTGATTATTTTGTTCAATGACAGCA
AGTCCAGCAAGACCATTCAGGGCGACAACAATTTTCCTGAGCTCTTCCTCCCCTTCGACTTTTG
CTTTCCCAATAAGAACCTGCATAAAAAGGATAACTAACAACCTTGAGCACATTATCATGTAATT
ACACTGAAAATTATATGGTAAGGTACATAAAATCATTAGTTGTTTACCTGTAAAATTTCACCCA
TTGATAAAGGAGTACGCTGCAGGGAGCAGAGACCGAAACTCCCCACTTGCGGGTGGCAACAAGC
TTGTCGAAGTTTGAGCAGTGGGACTAGGAGTTTGGCAATGTCATCATTGGAGAGGTACAAATTT
GATACAACATTCGAGTCTGAGAGAGAAAGGGAGTGGCGTTAAAGCAGTTTCAGATTTTTTTAAA
TAAAGGAAATACAGGGTGGTATTGTGGTAACTGTTCAGCAACTAAACCACATGTTTAGCTGTAT
TTTGATTTTGTATCCAAATAAAATCTTTAAGGAGTTTAAGAGCATTGTAGACATTATTACTTTG
TTAGAAAGCAAAGCGTAAATAAAGATGAAAATTTCAGACAGCACATTTTTTTCATTGGCTGGTC
ATATGAGAGAAAACTAAAACAAGAAAGAGAAAGGCAGACACAAAAGTAATGGATGAACATCCTG
TCCCCACGGTATCAATCTAGCAAGAAGTAATGTGTGAAGTACCTGATATTGGCTCGCTTTTGTT
GGCATCATCTCTGATACGTCTTGTAATTTCATGTGCATGGTCCATGCAAGTGGCATGCTGCTTC
TGATAGAAATATTCTTCAATTGATGAAAAGATGAGCCACGAAAAGCACTCTTCTTGTGGAGGCA
GCTGTAACTCCCGTGAAACATGAATTTTAGAGGAGCGCCACATGATTTCCTTGAAGAACTTGTG
TGCATAATTCATAGCTACCATGTCCCCCTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021