Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d009714_circ_g.1 |
ID in PlantcircBase | zma_circ_009632 |
Alias | zma_circ_0003000 |
Organism | Zea mays |
Position | chr8: 77389054-77390566 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d009714 |
Parent gene annotation |
Jasmonic acid-amido synthetase JAR1 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d009714_T001:3 Zm00001d009714_T002:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.266497208 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
77389084-77390563(+) 77389117-77390499(-) |
Potential amino acid sequence |
MPICSCEETIHEFEMLTRDAGRVQKDTLKKILELNADAEYLNKFGLNGRTDVESYKSCIPLCVH SDLEPYIHKIADGDSSPLLTGKPVTSLSLSSGTTQGRPKFLPFTDELLETTLQIFQTSYAFRNR EYPIGRGKALQFIYGSKQVVTKGGILATTATTNLYRRARYKEGMKDIQSQCCSPDEVVFGSDFH QSLYCHLLCGLIYSDEVHQVFSTFAHSLVHAFQTFEEVWEDLCADIRDGVLSEKVTVPSVREAV TKILKPNPELADSIYKKCTGLSNWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGHLPLIS ADYGASEGWVGANINPTLPPEQVTYAVLPQTGYFEFIPLEVENSASSIHYLESEPVGLTEVEVG KTYEVVITTFGGDKSKILPVKMPICSCEETIHEFEMLTRDAGRVQKDTLKKILELNADAEYLNK FGLNGRTDVESYKSCIPLCVHSDLEPYIHKIADGDSSPLLTGKPVTSLSLSSGTTQGRPKFLPF TDELLETTLQIFQTSYAFRNREYPIGRGKALQFIYGSKQVVTKGGILATTATTNLYRRARYKEG MKDIQSQCCSPDEVVFGSDFHQSLYCHLLCGLIYSDEVHQVFSTFAHSLVHAFQTFEEVWEDLC ADIRDGVLSEKVTVPSVREAVTKILKPNPELADSIYKKCTGLSNWYGVIPALWPNAKYVYGIMT GSMEPYLKKLRHYAGHLPLISADYGASEGWVGANINPTLPPEQVTYAVLPQTGYFEFIPLEVEN SASSIHYLESEPVGLTEVEVGKTYEVVITTFGGDKSKILPVKMPICSCEETIHEFEMLTRDAGR VQKDTLKKILELNADAEYLNKFGLNGRTDVESYKSCIPLCVHSDLEPYIHKIADGDSSPLLTGK PVTSLSLSSGTTQGRPKFLPFTDELLETTLQIFQTSYAFRNREYPIGRGKALQFIYGSKQVVTK GGILATTATTNLYRRARYKEGMKDIQSQCCSPDEVVFGSDFHQSLYCHLLCGLIYSDEVHQVFS TFAHSLVHAFQTFEEVWEDLCADIRDGVLSEKVTVPSVREAVTKILKPNPELADSIYKKCTGLS NWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGHLPLISADYGASEGWVGANINPTLPPEQ VTYAVLPQTGYFEFIPLEVENSASSIHYLESEPVGLTEVEVGKTYEVVITTFGGDKSKILPVKM PICSCEETIHEFEMLTRDAGRVQKDTLKKILELNADAEYLNKFGLNGRTDVESYKSCIPLCVHS DLEPYIHKIADGDSSPLLTGKPVTSLSLSSGTTQGRPKFLPFTDELLETTLQIFQTSYAFRNRE YPIGRGKALQFIYGSKQVVTKGGILATTATTNLYRRARYKEGMKDIQSQCCSPDEVVFGSDFHQ SLYCHLLCGLIYSDEVHQVFSTFAHSLVHAFQTFEEVWEDLCADIRDGVLSEKVTVPSVREAVT KILKPNPELADSIYKKCTGLSNWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGHLPLISA DYGASEGWVGANINPTLPPEQVTYAVLPQTGYFEFIPLEVENSASSIHYLESEPVGLTEVEVGK TYEVVITTFG(+) MDSFFTATDRHLYWQNLGFITSEGSYHDFVGFANLNFSQANWF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |