Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d009714_circ_g.1 |
| ID in PlantcircBase | zma_circ_009632 |
| Alias | zma_circ_0003000 |
| Organism | Zea mays |
| Position | chr8: 77389054-77390566 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ue-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d009714 |
| Parent gene annotation |
Jasmonic acid-amido synthetase JAR1 |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d009714_T001:3 Zm00001d009714_T002:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.266497208 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
77389084-77390563(+) 77389117-77390499(-) |
| Potential amino acid sequence |
MPICSCEETIHEFEMLTRDAGRVQKDTLKKILELNADAEYLNKFGLNGRTDVESYKSCIPLCVH SDLEPYIHKIADGDSSPLLTGKPVTSLSLSSGTTQGRPKFLPFTDELLETTLQIFQTSYAFRNR EYPIGRGKALQFIYGSKQVVTKGGILATTATTNLYRRARYKEGMKDIQSQCCSPDEVVFGSDFH QSLYCHLLCGLIYSDEVHQVFSTFAHSLVHAFQTFEEVWEDLCADIRDGVLSEKVTVPSVREAV TKILKPNPELADSIYKKCTGLSNWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGHLPLIS ADYGASEGWVGANINPTLPPEQVTYAVLPQTGYFEFIPLEVENSASSIHYLESEPVGLTEVEVG KTYEVVITTFGGDKSKILPVKMPICSCEETIHEFEMLTRDAGRVQKDTLKKILELNADAEYLNK FGLNGRTDVESYKSCIPLCVHSDLEPYIHKIADGDSSPLLTGKPVTSLSLSSGTTQGRPKFLPF TDELLETTLQIFQTSYAFRNREYPIGRGKALQFIYGSKQVVTKGGILATTATTNLYRRARYKEG MKDIQSQCCSPDEVVFGSDFHQSLYCHLLCGLIYSDEVHQVFSTFAHSLVHAFQTFEEVWEDLC ADIRDGVLSEKVTVPSVREAVTKILKPNPELADSIYKKCTGLSNWYGVIPALWPNAKYVYGIMT GSMEPYLKKLRHYAGHLPLISADYGASEGWVGANINPTLPPEQVTYAVLPQTGYFEFIPLEVEN SASSIHYLESEPVGLTEVEVGKTYEVVITTFGGDKSKILPVKMPICSCEETIHEFEMLTRDAGR VQKDTLKKILELNADAEYLNKFGLNGRTDVESYKSCIPLCVHSDLEPYIHKIADGDSSPLLTGK PVTSLSLSSGTTQGRPKFLPFTDELLETTLQIFQTSYAFRNREYPIGRGKALQFIYGSKQVVTK GGILATTATTNLYRRARYKEGMKDIQSQCCSPDEVVFGSDFHQSLYCHLLCGLIYSDEVHQVFS TFAHSLVHAFQTFEEVWEDLCADIRDGVLSEKVTVPSVREAVTKILKPNPELADSIYKKCTGLS NWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGHLPLISADYGASEGWVGANINPTLPPEQ VTYAVLPQTGYFEFIPLEVENSASSIHYLESEPVGLTEVEVGKTYEVVITTFGGDKSKILPVKM PICSCEETIHEFEMLTRDAGRVQKDTLKKILELNADAEYLNKFGLNGRTDVESYKSCIPLCVHS DLEPYIHKIADGDSSPLLTGKPVTSLSLSSGTTQGRPKFLPFTDELLETTLQIFQTSYAFRNRE YPIGRGKALQFIYGSKQVVTKGGILATTATTNLYRRARYKEGMKDIQSQCCSPDEVVFGSDFHQ SLYCHLLCGLIYSDEVHQVFSTFAHSLVHAFQTFEEVWEDLCADIRDGVLSEKVTVPSVREAVT KILKPNPELADSIYKKCTGLSNWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGHLPLISA DYGASEGWVGANINPTLPPEQVTYAVLPQTGYFEFIPLEVENSASSIHYLESEPVGLTEVEVGK TYEVVITTFG(+) MDSFFTATDRHLYWQNLGFITSEGSYHDFVGFANLNFSQANWF*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |