Detail information of Zm00001d009714_circ_g.1


General Information
CircRNA Name Zm00001d009714_circ_g.1
ID in PlantcircBase zma_circ_009632
Alias zma_circ_0003000
Organism Zea mays
Position chr8: 77389054-77390566  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d009714
Parent gene annotation Jasmonic acid-amido synthetase JAR1
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d009714_T001:3
Zm00001d009714_T002:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATAGTGCCTCCTCCATTCACTACTTAGAATCAGAACCAGTTGGCCTGACTGAAGTTGAGGTTG
GCAAAACCTACGAAGTCGTGATAACTACCTTCGGAGgtgataaatccaagattctgccagtaaa
gatgccgatctgtagctgtgaagaaactatccatgagttcgagatgttaacacgcgatgctggg
cgtgtaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1215
Transcript exons: 77389054-77389363,77389465-77389566,77389764-77390566
GTGATAAATCCAAGATTCTGCCAGTAAAGATGCCGATCTGTAGCTGTGAAGAAACTATCCATGA
GTTCGAGATGTTAACACGCGATGCTGGGCGTGTACAGAAGGATACACTGAAAAAGATCCTCGAG
TTGAATGCTGATGCTGAATATCTGAACAAGTTCGGCCTCAATGGCAGGACTGATGTAGAGAGCT
ACAAATCCTGCATCCCGCTGTGTGTGCACAGTGATCTTGAGCCATACATCCATAAGATTGCTGA
TGGTGATAGCTCCCCACTCCTCACTGGGAAGCCCGTCACCTCCCTTTCCCTCAGTTCTGGTACA
ACGCAGGGAAGGCCTAAGTTCTTGCCGTTTACTGATGAATTGCTTGAGACCACACTTCAAATAT
TCCAGACTTCATATGCATTTAGGAACCGTGAGTATCCAATTGGAAGAGGAAAAGCCTTGCAGTT
TATCTATGGTAGCAAGCAAGTGGTAACAAAAGGCGGCATCCTTGCCACAACTGCAACAACAAAC
TTGTACCGGAGGGCACGATACAAGGAGGGGATGAAGGATATCCAGTCTCAATGCTGCAGCCCTG
ATGAAGTTGTTTTTGGCTCTGACTTCCACCAGTCCTTGTATTGTCACTTGCTCTGTGGTCTAAT
ATACTCTGATGAGGTCCATCAGGTGTTCTCGACATTCGCTCACAGCTTAGTCCATGCATTTCAA
ACATTTGAGGAGGTTTGGGAAGATCTCTGTGCTGACATAAGAGATGGTGTCCTCTCAGAGAAAG
TTACAGTGCCATCGGTTCGTGAAGCCGTGACAAAAATCCTCAAGCCCAATCCTGAGCTCGCTGA
CTCGATCTATAAGAAGTGTACGGGCCTGAGCAACTGGTACGGTGTAATCCCAGCACTCTGGCCA
AACGCAAAGTATGTGTACGGTATCATGACAGGGTCCATGGAACCGTATTTAAAGAAACTGAGGC
ACTATGCTGGGCACTTGCCTCTGATAAGCGCAGATTACGGCGCATCTGAAGGATGGGTTGGTGC
TAATATAAACCCCACACTTCCACCTGAACAGGTGACATACGCTGTTCTCCCTCAGACCGGTTAT
TTTGAGTTCATTCCTTTGGAGGTGGAGAATAGTGCCTCCTCCATTCACTACTTAGAATCAGAAC
CAGTTGGCCTGACTGAAGTTGAGGTTGGCAAAACCTACGAAGTCGTGATAACTACCTTCGGAG

Genomic sequence GTGATAAATCCAAGATTCTGCCAGTAAAGATGCCGATCTGTAGCTGTGAAGAAACTATCCATGA
GTTCGAGATGTTAACACGCGATGCTGGGCGTGTACAGAAGGATACACTGAAAAAGATCCTCGAG
TTGAATGCTGATGCTGAATATCTGAACAAGTTCGGCCTCAATGGCAGGACTGATGTAGAGAGCT
ACAAATCCTGCATCCCGCTGTGTGTGCACAGTGATCTTGAGCCATACATCCATAAGATTGCTGA
TGGTGATAGCTCCCCACTCCTCACTGGGAAGCCCGTCACCTCCCTTTCCCTCAGGTAATTACAC
TGCTTGAAAAATGTGTCGTCTTATCGTTTATATTAGTGTGTGGATGTCGGTGTTTTGTAACTTG
ATGTTTTTTTTCTTCCTTTGGACGCAGTTCTGGTACAACGCAGGGAAGGCCTAAGTTCTTGCCG
TTTACTGATGAATTGCTTGAGACCACACTTCAAATATTCCAGACTTCATATGCATTTAGGAACC
GGTAAGCATCATCATTATGTTTCATTTTTCACAAGTATCCCTTCTACTTGTGAATGAGCAGGGT
TTCATCTCACAGTGTGCAACATAAGGTTTTTTTTTATATAAAGCTCTAATCAATGTGATGTCCA
TGTGAATAAACCATTGGTTGGTTTCGGATTCCTTATGTCATAGATCTTAAGTACAGTTTTCTTT
TCACAGTGAGTATCCAATTGGAAGAGGAAAAGCCTTGCAGTTTATCTATGGTAGCAAGCAAGTG
GTAACAAAAGGCGGCATCCTTGCCACAACTGCAACAACAAACTTGTACCGGAGGGCACGATACA
AGGAGGGGATGAAGGATATCCAGTCTCAATGCTGCAGCCCTGATGAAGTTGTTTTTGGCTCTGA
CTTCCACCAGTCCTTGTATTGTCACTTGCTCTGTGGTCTAATATACTCTGATGAGGTCCATCAG
GTGTTCTCGACATTCGCTCACAGCTTAGTCCATGCATTTCAAACATTTGAGGAGGTTTGGGAAG
ATCTCTGTGCTGACATAAGAGATGGTGTCCTCTCAGAGAAAGTTACAGTGCCATCGGTTCGTGA
AGCCGTGACAAAAATCCTCAAGCCCAATCCTGAGCTCGCTGACTCGATCTATAAGAAGTGTACG
GGCCTGAGCAACTGGTACGGTGTAATCCCAGCACTCTGGCCAAACGCAAAGTATGTGTACGGTA
TCATGACAGGGTCCATGGAACCGTATTTAAAGAAACTGAGGCACTATGCTGGGCACTTGCCTCT
GATAAGCGCAGATTACGGCGCATCTGAAGGATGGGTTGGTGCTAATATAAACCCCACACTTCCA
CCTGAACAGGTGACATACGCTGTTCTCCCTCAGACCGGTTATTTTGAGTTCATTCCTTTGGAGG
TGGAGAATAGTGCCTCCTCCATTCACTACTTAGAATCAGAACCAGTTGGCCTGACTGAAGTTGA
GGTTGGCAAAACCTACGAAGTCGTGATAACTACCTTCGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.266497208
Functional Information
Coding potential Y
Potential coding position 77389084-77390563(+)
77389117-77390499(-)
Potential amino acid sequence MPICSCEETIHEFEMLTRDAGRVQKDTLKKILELNADAEYLNKFGLNGRTDVESYKSCIPLCVH
SDLEPYIHKIADGDSSPLLTGKPVTSLSLSSGTTQGRPKFLPFTDELLETTLQIFQTSYAFRNR
EYPIGRGKALQFIYGSKQVVTKGGILATTATTNLYRRARYKEGMKDIQSQCCSPDEVVFGSDFH
QSLYCHLLCGLIYSDEVHQVFSTFAHSLVHAFQTFEEVWEDLCADIRDGVLSEKVTVPSVREAV
TKILKPNPELADSIYKKCTGLSNWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGHLPLIS
ADYGASEGWVGANINPTLPPEQVTYAVLPQTGYFEFIPLEVENSASSIHYLESEPVGLTEVEVG
KTYEVVITTFGGDKSKILPVKMPICSCEETIHEFEMLTRDAGRVQKDTLKKILELNADAEYLNK
FGLNGRTDVESYKSCIPLCVHSDLEPYIHKIADGDSSPLLTGKPVTSLSLSSGTTQGRPKFLPF
TDELLETTLQIFQTSYAFRNREYPIGRGKALQFIYGSKQVVTKGGILATTATTNLYRRARYKEG
MKDIQSQCCSPDEVVFGSDFHQSLYCHLLCGLIYSDEVHQVFSTFAHSLVHAFQTFEEVWEDLC
ADIRDGVLSEKVTVPSVREAVTKILKPNPELADSIYKKCTGLSNWYGVIPALWPNAKYVYGIMT
GSMEPYLKKLRHYAGHLPLISADYGASEGWVGANINPTLPPEQVTYAVLPQTGYFEFIPLEVEN
SASSIHYLESEPVGLTEVEVGKTYEVVITTFGGDKSKILPVKMPICSCEETIHEFEMLTRDAGR
VQKDTLKKILELNADAEYLNKFGLNGRTDVESYKSCIPLCVHSDLEPYIHKIADGDSSPLLTGK
PVTSLSLSSGTTQGRPKFLPFTDELLETTLQIFQTSYAFRNREYPIGRGKALQFIYGSKQVVTK
GGILATTATTNLYRRARYKEGMKDIQSQCCSPDEVVFGSDFHQSLYCHLLCGLIYSDEVHQVFS
TFAHSLVHAFQTFEEVWEDLCADIRDGVLSEKVTVPSVREAVTKILKPNPELADSIYKKCTGLS
NWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGHLPLISADYGASEGWVGANINPTLPPEQ
VTYAVLPQTGYFEFIPLEVENSASSIHYLESEPVGLTEVEVGKTYEVVITTFGGDKSKILPVKM
PICSCEETIHEFEMLTRDAGRVQKDTLKKILELNADAEYLNKFGLNGRTDVESYKSCIPLCVHS
DLEPYIHKIADGDSSPLLTGKPVTSLSLSSGTTQGRPKFLPFTDELLETTLQIFQTSYAFRNRE
YPIGRGKALQFIYGSKQVVTKGGILATTATTNLYRRARYKEGMKDIQSQCCSPDEVVFGSDFHQ
SLYCHLLCGLIYSDEVHQVFSTFAHSLVHAFQTFEEVWEDLCADIRDGVLSEKVTVPSVREAVT
KILKPNPELADSIYKKCTGLSNWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGHLPLISA
DYGASEGWVGANINPTLPPEQVTYAVLPQTGYFEFIPLEVENSASSIHYLESEPVGLTEVEVGK
TYEVVITTFG(+)
MDSFFTATDRHLYWQNLGFITSEGSYHDFVGFANLNFSQANWF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b