Detail information of Os05g0176100_circ_g.7


General Information
CircRNA Name Os05g0176100_circ_g.7
ID in PlantcircBase osa_circ_026844
Alias NA
Organism Oryza sativa
Position chr5: 4567381-4570129  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os05g0176100
Parent gene annotation Similar to Cellulose synthase BoCesA1. (Os05t0176100-01);Similar
to RSW1-like cellulose synthase catalytic subunit (Fragment). (
Os05t0176100-05);Similar to Cellulose synthase BoCesA1. (Os05t01
76100-06);Similar to Cellulose synthase BoCesA8. (Os05t0176100-0
7)
Parent gene strand -
Alternative splicing Os05g0176100_circ_g.8 Os05g0176100_circ_g.9
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0176100-01:5
Os05t0176100-05:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCACTCTGGACCTTTGCCATTGCCATGCTTATAATTGAATTCATTGTCCAGGTCATCAACAT
CTTCCTCCTCCTCATCGCCCTGAACTCTAGGGCTACcttcaatgccctcttctatatcttccat
gttaaagataggagctgaagactctgttctcttcatcatacggtttttgctatccatgtagctc
ttgctctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCAATGCCCTCTTCTATATCTTCCATGTTAAAGATAGGAGCTGAAGACTCTGTTCTCTTCAT
CATACGGTTTTTGCTATCCATGTAGCTCTTGCTCTTTTTCTTTCTGCCACCACAGCAGCTCTTA
ACAACAATGTTAGGTTCCAAATCAGCCTCAGTTAGTACAGGATCATAGCCATACAAGGCCTGCC
TATTGAAGCAGCAACCTGTTCCCACATAAACTGGACCCTGAATGCCATCTAAACCTTTCATGTT
AATCTGCAAAGCAGAAAAGCATGTCAGACATGAAAATTTTGATATGATGGACAAACAAAGGCAC
CATTGTACTCACATCAAAGAAGACTATGTTGCGATTAGCGTATCGATCGTGCAAGTCAATGCCA
TCAAATCTTTGTGGGAACTGAACATAACAAGTTTTCCTTCCTAGTGCGGGATCCATCATGAAGC
ACATTGCTTCTCTAAGAGCTTTGCTACTGTTGAAGTAGTGATCACAATCCACATTGAGAAGATA
GGCACCATTTGTCAGCACAGCAGATACACGAATCTGCCCACCAGAAATAGGGGTATATAAGTAT
TGGGTTGATAAACTTCAGTGATAAATTTACAGAATTGAACACATACCAATGCATTCATTGCACC
AGCCTTCTTGTGATGCTGGAATCCTGGCCTCTTTTCACGAGAGACGTAGACAAGCCGTGGCAAC
TCGTTACCATCAGTGTCAAGCCCACCACTGTGCCCCAAGAACACCTGTAATCAACATAACAGGA
GTTTAGTATACACGAACCTGATTAAATTAGAATCTTAAACCACTCCCCCATTAGAAGTAAAGAT
CACCTGAATCATGCCAGGGTGATCCCTTGGGTTATTCCCAGGCCAAGCAGTGCCATCAGCCATG
GTCCACCCCTCTTCAGGTACTTTTTGTGCCTTCGCAACAAGAGCATTGATCCGTACCTTGAATT
CTTCATACTCTCTCTGAAACAGAGTATCCAAAGTTAAATACTCAGGCACAATGCAGATTGGCGG
TAATCTAACCATGACAGTAGAAGCTTACCTTCATTGCCCGCCTTTCTTTAACAAAGGAAGGTTG
GATTTTGTCCTTCAGGTAATCTATTTTTTGAGCAAAGTAAAACTCTGGAGCTCGTGGTTCAATA
TTGTGCTTCTTGCAAAACGGAACCCACTTCCTAGCAAATTCTGCAGTTTCTGACAGAGCCTCAA
AAGTTAACATAGCTGAACCATCGTCAGAAACATAGCATGACACTTTGTCAACAGGGTAATCCAC
AGCCAGAATGGACAAAACAGTGTTTGCTGTGATCAGAGGAGGTTCCTTTAGTGGATCCACCGTA
CTGACAAAGACATCAATGGGAGCAAGCTGTGATGGCTCTCCCTCCCTATCATATCTGCAACATT
AGATTGGACGCCTCAGGACACAGAATATCAATGTAAGAGAGTTTCAGTGCCACGACCCTGAAAA
AATGTATATCAAGTATCTCATCTTACCTCAATGCAAGCCTGTCAAGGTATGTTTCACGGTTTAT
CGGGTACCACTTTGGGAATTGATCTAGGAGCCAGGATAAGGCAAACCAAATTTCACAGATAACA
GATACTAGCCACAATCCATAAGCATCCCGCACTGGATGAGTGACACGATATTGGAAGAAGAACA
TCAGGATGATAAGACGGAGAATGATAACAATCCGGTAAAGGTTGAGCTGGTTTGAAGGGATAGG
CACTATGCGGCTCAGAGGTAGACGTGCATCATCAACCCTGTGAAAGACAATTACAGAAAGATCA
ATATACTTGAAGCAATATATACAATATACATCAAACTGCAGTAGTGGTAAAGCATAGTCAATGA
AAATCTATATCCTGATCAAACTCAGAGGTATAAAACTATCTAATAAGTCATTGAATAACATGGA
GAAAAGGGCATTCTAAGTGCTTGAGTGAGCTATCTTCAGTATATGCTGATATGATATACCTTCA
GTCTGCGCATCATAAAGACCAAGTTTTTGGGTGTCTGATGTGAATTTCTATAATGCAAAAATAA
CTATCTAAATCCACTGCAAAGCAGCGTGTATAATATAAGGATAGGTTGTCCATACATTTGCATA
TCTTCACCATTTGAACCAGTCCCTTCCATGTCTCCCCCTCTTGCCTCTGGATATTTATTAGCTA
CCTGCATCATATTTTTGTCCTGCTTGTTCCTCCAGCTGGCAACTCTTTCTTGCCAGTCAACACT
GTTAATCCCATAGGAATTCAAGTCCTTGGAGGGGTCCACAATCCTCACAGGAACTGGAATCATA
ATAGAGAAATGTTAGCACTTTCCAAACCAATGTTTTTCCCAAGGAGCAATTTATGATGAGTAAG
AAAAGTACCTGGAACACTTGGATCAACATAGCTTGATGTTCCGCTGCGGATAGAATGGCGATCG
GGGGAAGCATCAGGGATCTCTCCTGAGATCTGAATGAAAATATCAGTTTGTCAGTACCCAAGAG
CACAGCATTCTTACAGAAACAAGTTCACTGATACAAGTGAGAACTTATATCATGTTAAACTGTA
CCTGTTGCCCACTTGTCAGACGGGGAATCCGATGTTGTTCGTGGCGAGAAGATGAAGACAGGTC
AACATCTTCCCCCTGTCTCTGTATCTGCCACTCTGGACCTTTGCCATTGCCATGCTTATAATTG
AATTCATTGTCCAGGTCATCAACATCTTCCTCCTCCTCATCGCCCTGAACTCTAGGGCTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.29468045
Functional Information
Coding potential Y
Potential coding position 4570057-4567423(+)
4569568-4567383(-)
Potential amino acid sequence MLIIEFIVQVINIFLLLIALNSRATFNALFYIFHVKDRS*(+)
MMQVANKYPEARGGDMEGTGSNGEDMQMVDDARLPLSRIVPIPSNQLNLYRIVIILRLIILMFF
FQYRVTHPVRDAYGLWLVSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDREGEPSQLA
PIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWV
PFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKVPEEG
WTMADGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNAL
IRVSAVLTNGAYLLNVDCDHYFNSSKALREAMCFMMDPALGRKTCYVQFPQRFDGIDLHDRYAN
RNIVFFDINMKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIVVKSCCGGRKKKSKS
YMDSKNRMMKRTESSAPIFNMEDIEEGIEGSPRVQGDEEEEDVDDLDNEFNYKHGNGKGPEWQI
QRQGEDVDLSSSSRHEQHRIPRLTSGQQISGEIPDASPDRHSIRSGTSSYVDPSVPVPVRIVDP
SKDLNSYGINSVDWQERVASWRNKQDKNMMQVANKYPEARGGDMEGTGSNGEDMQMVDDARLPL
SRIVPIPSNQLNLYRIVIILRLIILMFFFQYRVTHPVRDAYGLWLVSVICEIWFALSWLLDQFP
KWYPINRETYLDRLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKV
SCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKER
RAMKREYEEFKVRINALVAKAQKVPEEGWTMADGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGN
ELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNSSKALREAMCFMM
DPALGRKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGLDGIQGPVYVGTGCCFNRQALYGY
DPVLTEADLEPNIVVKSCCGGRKKKSKSYMDSKNRMMKRTESSAPIFNMEDIEEGIEGSPRVQG
DEEEEDVDDLDNEFNYKHGNGKGPEWQIQRQGEDVDLSSSSRHEQHRIPRLTSGQQISGEIPDA
SPDRHSIRSGTSSYVDPSVPVPVRIVDPSKDLNSYGINSVDWQERVASWRNKQDKNMMQVANKY
PEARGGDMEGTGSNGEDMQMVDDARLPLSRIVPIPSNQLNLYRIVIILRLIILMFFFQYRVTHP
VRDAYGLWLVSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDREGEPSQLAPIDVFVST
VDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNI
EPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKVPEEGWTMADGTA
WPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLT
NGAYLLNVDCDHYFNSSKALREAMCFMMDPALGRKTCYVQFPQRFDGIDLHDRYANRNIVFFDI
NMKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIVVKSCCGGRKKKSKSYMDSKNRM
MKRTESSAPIFNMEDIEEGIEGSPRVQGDEEEEDVDDLDNEFNYKHGNGKGPEWQIQRQGEDVD
LSSSSRHEQHRIPRLTSGQQISGEIPDASPDRHSIRSGTSSYVDPSVPVPVRIVDPSKDLNSYG
INSVDWQERVASWRNKQDKNMMQVANKYPEARGGDMEGTGSNGEDMQMVDDARLPLSRIVPIPS
NQLNLYRIVIILRLIILMFFFQYRVTHPVRDAYGLWLVSVICEIWFALSWLLDQFPKWYPINRE
TYLDRLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDG
SAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYE
EFKVRINALVAKAQKVPEEGWTMADGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYV
SREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNSSKALREAMCFMMDPALGRKT
CYVQFPQRFDGIDLHDRYANRNIVFFDINMKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEAD
LEPNIVVKSCCGGRKKKSKSYMDSKNRMMKRTESSAPIFNMEDIEEGIE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017