Detail information of BGIOSGA015244_circ_g.1


General Information
CircRNA Name BGIOSGA015244_circ_g.1
ID in PlantcircBase osi_circ_014269
Alias Chr04:18368074_18368695(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 15592116-15592737  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015244
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   AT-AC
Number of exons covered BGIOSGA015244-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACATTCAGAAGCATTAAAAAATGCAAAGTTCTAATATCAACCAGGACAGGTGACTTTCAGCTC
GGTGGATGAAAGACAAACAGCGTTCAAAAACTTACAaaggtagtactcaaatgtaaaaatgtta
acatgcaacgtaactacatgttacccaattagatcatagccaccaactagcttcaaaaattctt
ccacctaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGGTAGTACTCAAATGTAAAAATGTTAACATGCAACGTAACTACATGTTACCCAATTAGATCA
TAGCCACCAACTAGCTTCAAAAATTCTTCCACCTAAGTTGCTACTTGTATTGAAACTAGATAAT
CATGACATCAAGAATTAACATTTCAATTTCATAGAACAATTCCCATTACCCAATTACCAAAATG
ATATTCCCATGCATATGTATTGCGAAGTGCATTATTAACATTTGCAGCTAAATTGCATTTCTAT
TGTGCATTGCATTATTAACATTTGGAGCTGAATTGCATATTTATTGTGCAGTGCATTATTAACA
TTTGCAGCTGAATTTATGTGCCAGTGCCATTTAAAATTCAGAACTGGAAGCTTCATTTGAAGCT
TTACACATCAGAAATTAAAAGGCATCATGCACCTAGAAAAATCCTAGCAATTACTTATGCATGT
TTGCTCGAGGTTGGAACACATGCAGAACTCCATGAAGGAATGAAAAATGCATATCTCCTCCCAA
TTCCCATGATCACATTCAGAAGCATTAAAAAATGCAAAGTTCTAATATCAACCAGGACAGGTGA
CTTTCAGCTCGGTGGATGAAAGACAAACAGCGTTCAAAAACTTACA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021