Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G14850_circ_g.6 |
ID in PlantcircBase | ath_circ_002608 |
Alias | At_ciR5579 |
Organism | Arabidpsis thaliana |
Position | chr1: 5122183-5122670 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G14850 |
Parent gene annotation |
NUP155 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G14850.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.312792614 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5122335-5122185(-) |
Potential amino acid sequence |
MTCVTCTNKGRIFMAGRDGHIYELLYTTGSGWNKRCRKVCLTAGVGSMISRDGQCPEYSGEEQA ICAVGLAKCRPGVFVEAIQYLLVLATPVELVLVGVCCTEGPDGRDPYAEISVQPLPDYTISSDG VTMTCVTCTNKGRIFMAGRDGHIYELLYTTGSGWNKRCRKVCLTAGVGSMISRDGQCPEYSGEE QAICAVGLAKCRPGVFVEAIQYLLVLATPVELVLVGVCCTEGPDGRDPYAEISVQPLPDYTISS DGVTMTCVTCTNKGRIFMAGRDGHIYELLYTTGSGWNKRCRKVCLTAGVGSMISRDGQCPEYSG EEQAICAVGLAKCRPGVFVEAIQYLLVLATPVELVLVGVCCTEGPDGRDPYAEISVQPLPDYTI SSDGVTMTCVTCTNKGRIFMAGRDGHIYELLYTTGSGWNKRCRKVCLTAGVGSMIS(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |