Detail information of Chr2_circ_ig.7


General Information
CircRNA Name Chr2_circ_ig.7
ID in PlantcircBase csa_circ_000815
Alias Chr2:2072449_2077014
Organism Cucumis sativus
Position chrChr2: 2072449-2077014  JBrowse»
Reference genome Cucumis sativus v1.5
Type   igg-circRNA
Identification method Find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTAAAATTGGGAGCTGTGTGGATCTTTTCAAATCTCTCTATTGGCAGGAACAAGGAAATGGC
CAATGGTTTCTACGGGAATTGCATGCAACGTTAAAGgagggaaagtacgaaccatccaaacagg
aacaagatcatgcttttttgttgcagcttcttttctggttcaaacagtcattcaggtacttgcc
ttgtataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGGAAAGTACGAACCATCCAAACAGGAACAAGATCATGCTTTTTTGTTGCAGCTTCTTTTCT
GGTTCAAACAGTCATTCAGGTACTTGCCTTGTATAACTTTATTGGATAGATTATTAAACTCCAA
TCATTTTCGGAGTCCATGGTATTCTTTTAAGTTGTAATCCTTGGTCAATATGCTTCAATAGCTG
ATAGTTCTTACTAATATGATTTGAATCTTGTGATGTATTTAGTCCCCTTATGTGTTATGCTAAC
ATTATTGGTTGATTACACTCTTGCTTTTATTTATTATTGTGAAGTTGGGTTAATGCACCTTCTT
GTGAGCACTGTGGAGATACAACAACATATCAAGATATGGGCAATCCACTTCCTTCAGAACTTCA
GTTTGGCGGTTACCGAGTTGAACTATATGGGTATGTGCAATGGACTCTTTTGGTTAGACTTATA
TTCTGGATTTGACATTCTATATTTCTGGAACTCTTCTCTGTTATGTTCATGTACAGTATATTTT
TTGCCAAATTACATAAAGAATAAGGTGTAAACGAATTGTTTATAATTTTTCCCTGCTACCTCTG
TGATTACTTTCTCTACCATCTAACGTTCTGCCTATATTATTTGATTGAATGATGTGTTATGTGA
CATTTTTTATTACCATCATGTTATTCTTTGACAACTACTAATAGTTTTCTTCATTCAAATAAAT
AGCCATGAAGATGAACTTGGCTTATTTTACTTCTCACATTTCTTCTTAAAATATACATTTTGTG
TTTTTAAATCAAATAAATAATTTTTTCTAAGATTCAATAAAAAAAGATAACTATTATAAAAAAG
AAGAATCCCAACTTGGTACTAACCAGGCATGGAAAACGTAACACTTATTATTATTATTGCAGTT
TAACTAATTTAATTACAAATTCGAGAGACTTTTTTGGTACACCTAGAGGTGTTTGGATTTTTAC
TCTTTTATTTCATTATCAATGAAATTTGTTTTTCTTTTCAAAAAAGATGGTCTGAACTGGGTTC
CATTTCCAAATGTGAATAGTTTTTGGATAGTGGTAAATTTTAGGCGTAGGCATAGAGTTTTAGT
TTGAGGTTTTGGTGTCTTGGTGAATGGTAGAAATAAAATTAATGTATTTCATATTCTTCCCTCA
TTCCTCTCTAATCTTCTACTTCTCCTCTCTTCTCTCTCTTTTTACACTTCTAGCTGTAATTCAT
GCCAAAAGGTTACCCGTTTCCCACGTTTCAACAATCCAGTAAAGGTACTCAAATTTTTTTTATT
GAGTTAAGAACTCTTATATAATTAAATAGTTTTCAATTTCATTCCCTCTTGGCATGCAGCTTAC
TGAAACAAGGAGGGGACGCTGTGGAGAATGGGCCAATTGCTTTACATTCTACTGTCGTGTTTTT
GGCTATGAATCTCGATTGGCGAGTTACCTCATGATTCTAATCTTTTTTTAAAATGATGGTTTTT
TAGATAATCGTAATCTGCAATTATGTTCAGGGAAGATACCCTTCTACATGTAGTAATATATATT
AAATGATTTAATCTATTCTTTAAGAAGAAATGGTAGCTTGATGGAGATTTGGCTATTTTGTACT
AATTTTTGTTATCACCAGATTCTTGATCTTACCGATCATGTTTGGACCGAGTGCTTCTCCCATC
TTTTAGGGAGGTTAGTTAATTTCTAGGTCTATTATTCTTATCAGAAAAAAATAATAAGCACCCT
TGCAGTAGTGATTTATATTAGTGAACCCTTAAAATTTGCTCTTGACTGCTATTTATTACTCAGG
TTTATGCATCTAGATCCCTGTGAAGCAGTGTATGATCAACCACTGTTGTATGAAAAGGGGTACT
TTCTTTTATCAATTCATCTCATTATGATGTATGGACCGAAAGTAATATTTTTCTCATCGGAGTA
TAATTTTATTTTTCTATTCACAGATGGGATAAGAAACTAAACTATGTCATTGCAATTTCTATAG
ATGGAGTTCGTGATGTCACTAAGCGCTACACAAGGAAATGGAATGAGGTATGAAGTAATGACGT
CAGTGTCTGTTCCGCAATCTAATTTTCAACTCTACTGTAGAAAAAAAAAGAAACAGTATGAATT
ATCTTCTCAATGTCTTGCTTTTCTCTTGTCAATTTATGCATGATTTATTTTTTTAAACAAACAA
CATAGGTTTTATCTCGAAGAAATATCATTACCGAGGAGATCTTATCAAATATGCTTGCAGAAAT
AACACGACAATGTCGATCGACCTTTACATCTCAATTACTGTCCGAACTTGAAGATCGTGATGAA
AAAGAAAACCAAGCCCGGGAAAGAAACACTCACACTATTGATGATTCTTCAGTTATATTACCTG
GAAGACAGAGTGGAGACAAGGAGTGGCGCAAATCAAGATTGGAGATTGCCTCTGATGAGGAAGG
CTCTTTGAGTTCTTCTGCATGTTCTGTTCGTAATTGTGTGGATGAGCATGTGACAAGGATTTAT
AGTGCATTTGGTTGTATTCTATCTCAACTTCCTGATGAAGAATTTTCCAAGTCTGCAACATTTG
AAGTACTTTCATTTATTCGAGGGATTGTAACTGATCTCAAGAAATCTGCCTTTAGGACAAGAAC
AGCTTTAGTAGATTCATACTTGGATGAGACTAAAGCCTTTTCGCATCGGTTGTTTCCTTCCTTG
AAGTGTTTTCTCGGTGTTTTGTCATTAGACAGTAATCTGGACAATGATGGGAGGGTTGAAATTT
GGTTGGCCAAGGAGCCTGTTTATACCTCTTTAGCATTGCCTGTTGCGTTAGATGCTCTTGAAGA
AGTAATACAAGATGTTAACAAATGTGATAACTTTGGTAGAGCCTTTTTATGTCTTCCTCGTTTG
AAGTTAAACAGAATTCATTCTGGCTCAGTCCTTGCAAGTGGCGAGGAACTTCCTTTTGGAATAG
TAAGTTCTGTTACCATTGCCTGATGCTTTATTATTTTAGGGAAGCATGCGCTTAGATTTCTTTA
CTCAAACGTACAGGCAACATCAGCATTTGATGGGATTCGTTCATCCAAATGGGAAGAGCCAAAT
GGTGCGAAAGGTATGTATAAGGCTGTCAAACATTAAATACATCAAAACATATTGAACATTTTGT
TGTGTTAACCACGGGGTTGGAAATTAGCTGAAGATTTGCATTCATTTACTATTCTTCTGCAAAA
ACTCAACTGTCACAATTTCAGCTAGCTAGTTTTTGGACTCATGTAGTATTCTTCTACATTTCCT
CCTCTTGTAGGTTGTTGGATAATGTACAAGGTATTTGACAACAAGATGGAAGAACTGGCTGCAT
ACGAGTTGATGTCTGCTAATGATGCACCTGAAAGGGATCCAATGGATTGGTATTATTTTCAAAG
CAGTTGATCAAATATTACCATCCTGTATTACTATTATATGTTGCCTTGTGGTTTTATTTTCAAG
TGATCTGTTTTGAGCTAGAAAATGATTTCATTGTTTGGCCTATTTGCACTTTCCATGTATAACC
TGACAGGAAAATCTCTAGTAACGAAGCTGCATGTTAGTCAGTCCATCAAATTTTTTTTGTAAGA
TTATGAACTATGGATAAGAGATGAATAAGTTCTTCAAGATATTTGCAACATTTGTCGTTGGGCT
GTTCATCTTTTCAGTCTCTTTGACATAGTTGCTTGAAGACTTTCAGTTTGTGTTCGGCTTTGAA
TCAAACTGGTTATGCTATTATTTAGGGAAAAAAAAACATGGATGCAACCTGTTTGCACCCATCT
TGGGTAGCCCCGCCCATGCAATCTTTTTTATTTTATTTTTCCATGTAAGTACCCGGGGAGCGTG
AGGATAAGGTGAAGCCTAGACTCTACCTTAGAGAAAATTTGTTTGTGGCATGCTAGTTTCTTTG
CTATTTTGTGGGTAGTTTGGCTTGATTGAATCCGTCAAATTTCTAGAGAGGTCAAAAGATAGGG
TGATGAGGAATATAATGTGGCGAGCTGTAAGATGGGGTTGTCAAATATTTGATCAGAGTCTCGT
TTATGGGTCTTCATTTTTGCGGTTTTCCCCCCTCATATATTCTTTTATTCTGTTCAATTCTGCT
GGCAGGATTGTTGAAGGGAGTGAAGATGGGGGAAGCAGTTGGCATCTTCTTGATGAACAAACAA
ATCAAATATTTGACAACCGTTTCCAACGTAGAAGTTTCTTTGTTACCAAAACTGGTCTCTTATC
AAATACTTTCAGGTAAATATGCTAATGAATGATTTTGTCTCCAACATCAAAGAACGGTATCTTC
CACGTTCCTCTTCCTAATATGTTATCATGGATTCAGGTTTAGATTCTTGGCAGTTCGTGATGGT
GAGGCAACGTCAAGGTTACAGATTGGTAGCATTGATTTGTATGCTCCAAGTCTTTAACTCAATA
AGCTGAACTAGAGATTTTCCCAAAATAATCAAATAAGTAAAAGAAAAATAAACTAAAATTGGGA
GCTGTGTGGATCTTTTCAAATCTCTCTATTGGCAGGAACAAGGAAATGGCCAATGGTTTCTACG
GGAATTGCATGCAACGTTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.094501064
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References He et al., 2020