Detail information of AT1G32070_circ_g.6


General Information
CircRNA Name AT1G32070_circ_g.6
ID in PlantcircBase ath_circ_005367
Alias NA
Organism Arabidpsis thaliana
Position chr1: 11535458-11536177  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder
Parent gene AT1G32070
Parent gene annotation Acetyltransferase NSI
Parent gene strand -
Alternative splicing AT1G32070_circ_g.1 AT1G32070_circ_g.2 AT1G32070_circ_g.3 AT1G32070_circ_g.4 AT1G32070_circ_g.5 AT1G32070_circ_g.7 AT1G32070_circ_g.8 AT1G32070_circ_g.9
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G32070.2:4
AT1G32070.1:4
AT1G32070.3:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGATTGATGAAGGATAAGTACCATGTTGAATTGGGAATGTGAGATTGGAGAAAAACAGAGAG
TGATGATTCGATGGATATGAATTAGGAGGAGGGCTActgatgaatctgaatctgatgatgactt
cattacagaatgcaaagtagcaaccatataactattcttcaaagcagcagctagtttcactaac
ggtctcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATGAATCTGAATCTGATGATGACTTCATTACAGAATGCAAAGTAGCAACCATATAACTATT
CTTCAAAGCAGCAGCTAGTTTCACTAACGGTCTCCTTGGCCATCCCACCTATATTTTCCCATAA
GATAACCATAAATGAGAGTTTTTGAAGTATCATCAAGCATAAACAGAGCACAGGAGTAGTGTTT
TAAACTACCTTATCACAAAGACCTTGAAGATCATAAACATCAATCTCACCACCAGAAGAAAATA
TGATCTCTTCAACTAAACCATCTTCAAGATTTCTCTCAACTAAAGTAAATTCCACAGGTAACAA
TGGCTCAGTCTCTTCTTCTTCATCATTGACTATAGAAGGTGGTTCCACAAGTTGCGTACTATTA
TTATTCTTCACAAACCTGCAACAATGGTGTGTTATAGTATCAGCCCCTAATTTCTCATATGAGT
AAGTAAAGTATGAAGCTTTTTCAGTACCCAGATCGGATTGACTCCCAGAAATTGGCTCTGAGTC
GCAAAGTCTTCAACTTTCTACTTCCTGAAGAACAGAATTGTAATCTCAACTCTTGATACGAAGA
CCCAAATCTTCGAATTTGAATTGTGAAATTGAAAAAAAAAGTCAACAGATTGATGAAGGATAAG
TACCATGTTGAATTGGGAATGTGAGATTGGAGAAAAACAGAGAGTGATGATTCGATGGATATGA
ATTAGGAGGAGGGCTA
Conservation Information
Conserved circRNAs NA
PMCS 0.163775035
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017