Detail information of POPTR_0004s15790_circ_g.1


General Information
CircRNA Name POPTR_0004s15790_circ_g.1
ID in PlantcircBase pop_circ_001337
Alias Chr04:17290490|17291036
Organism Populus trichocarpa
Position chr4: 16323398-16323944  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ei-circRNA
Identification method find_circ
Parent gene POPTR_0004s15790
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues stem cambium
Exon boundary   No-No
Splicing signals   AA-CA
Number of exons covered POPTR_0004s15790.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAAAAAAAAACCCTTTCTCAATCAATTTGCTAATATTTGACAAAGGGAAAAAAATGCCTGCT
GCATTAAAAAAAATCAGAAAGTTTGAAAAGTAATTCaagcgattcttttcaccagaccatcaag
catctgtgttgggaataaatcaaaatttaactaaataaacagtaggcagttcgcaagaactcct
atagtctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGCGATTCTTTTCACCAGACCATCAAGCATCTGTGTTGGGAATAAATCAAAATTTAACTAAAT
AAACAGTAGGCAGTTCGCAAGAACTCCTATAGTCTGATATATGAAGCAACGAAGTTCACCTTGA
TATCTGTTTTTCAACAATGCAAGTGTACAGCTCTCACTATTAAAACTCCACAGGTAACTAGTCT
TAACTAACTGCACTCTTTTAAAATCTTCATTTCTCTTAACATGTTATCTTACTCGAAATTCAAA
GTTCATAATTCATGTTAATTGCCTCGTTGGATGAGTAAGATAAAATGTAGTAGATAAGCAATAA
ACATTATGAAGACTGTAAACATTTTGAAATTCATTTACTACATATTGAAGATCAAGATGCTACC
ATGGTATACAAGAAAATATCATTTCATCATGACATACACAAAAAAATAAAAGGTTTATTTGAAA
AAAAAAAAAAACCCTTTCTCAATCAATTTGCTAATATTTGACAAAGGGAAAAAAATGCCTGCTG
CATTAAAAAAAATCAGAAAGTTTGAAAAGTAATTC
Conservation Information
Conserved circRNAs NA
PMCS 0.125727041
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020