Detail information of AT5G40910_circ_g.1


General Information
CircRNA Name AT5G40910_circ_g.1
ID in PlantcircBase ath_circ_041795
Alias NA
Organism Arabidpsis thaliana
Position chr5: 16395537-16399921  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method CIRI
Parent gene AT5G40910
Parent gene annotation Disease resistance protein (TIR-NBS-LRR class) family
Parent gene strand +
Alternative splicing AT5G40910_circ_g.2 5_circ_igg.3 5_circ_igg.4
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered AT5G40910.5:3
AT5G40910.3:3
AT5G40910.8:5
AT5G40910.6:4
AT5G40910.7:6
AT5G40910.4:4
AT5G40910.9:4
AT5G40910.2:6
AT5G40910.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAATGCAGGGTCCAGAACTAAATACAGAGGTTCACAAACATGGTTTAGGTCCACAACCATTG
GGCGGCACCGCAGGACCACCATCTACCAGTGCGAAGagataccatgtcttttcgagtttccatg
gaccagatgtccgtagtggatttctcagtcatttacacaatcacttcgaaagcaaagggatcac
tccgttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGATACCATGTCTTTTCGAGTTTCCATGGACCAGATGTCCGTAGTGGATTTCTCAGTCATTTAC
ACAATCACTTCGAAAGCAAAGGGATCACTCCGTTCAAGGATCAAGAGATCGAGAGAGGCCATAC
GATCGGACCTGAGCTCATACAAGCGATTAGAGAATCTAGAGTCTCGATTGTGGTGCTTTCAGAG
AAGTACGCTTCTTCGTGCTGGTGCTTAGATGAGTTGGTGGAAATCTTGAAGTGCAAAGAAGCTT
CGGGGCAAGTTGTGATGACTATTTTTTACAAAGTTGATCCGTCCGATGTACGGAAACAGCGGGG
AGACTTCGGAAGTACTTTCAAGAAAACATGTGAAGGGAAAACCTGGATAGTGAAGCAGAGATGG
ATCAAAGCTTTGGAATATATAGCAACCGTAGCTGGAGAACACTCTCTAAGCTGTTTTTTTTTTT
TTCTCTTGGCTCAATGAGTTAGAATGCTTTTCTCTTTCTTAATTGTTTCTTCAACCGTGGAATT
TCTATCATTTAATTAGACCCACCAACTTGATTTTGTTTGCTTTTATTAGGGCTAATGAAGCAGA
GTTGATCCAAAAGATTGCTACAGATGTTTCAAACAAACTTAATCTTACACCGTCGAGGGATTTT
GAGGGGATGGTGGGACTTGAAGCTCATTTGACAAAACTGGACTCTTTTTTATGCCTTGAGAGTG
ATGATGTAAAGATGATTGGCATTTGGGGTCCTGCTGGAATTGGTAAGACTACCATTGCTAGAGC
TTTATTTAACCAACTCTCTACCGGTTTTCGGCTTAGTTGTTTTATGGGGACCATTGATGTTAAT
GACTATGATTCGAAGTTGTGTTTGCAAAACAAGCTTCTGTCCAAAATTTTGAACCAAAAGGATA
TGAAGATACATCATTTAGGCGCAATTGAAGAATGGCTACATAACCAAAGAGTTCTTATAGTTCT
TGATGATGTGGATGATCTAGAGCAACTAGAGGTATTGGCTAAAGAAAGTTCTTGGTTCGGTCAT
GGAAGTCGGATCATTGTTTCCTTAAATGATAGAAAGATTTTGAAGGCACATGGGATCAACGATA
TCTACGATGTGGATTTTCCATCCGAAGAAGAAGCTCTTGAGATCTTATGTCTATCTGCTTTCAA
ACAAAATTCTCCACAAGATGGTTTTGAAGAGGTTGCAAAAAGAGTAGTAGAGCTTTGCGGTAAG
CTTCCATTGGGCCTTCGTGTTGTGGGTTCTTCTTTTTATGGGGAGAGCGAGGATGAGTGGAGAA
TTCAATTATATGGAATTGAAACTAATCTTGATAGGAAAATTGAGAATGTCTTGAGAGTGGGATA
TGACAAATTGTCGGAGCGACATCAATCTTTGTTTCTTCATATTGCATGCTTTTTCAACCATAAA
AGTGTTGATTATGTGACAACCATGCTCGCTGACAGTACTTTGGATGTCGAAAATGGGTTAAAGA
CCTTAGCCGCTAAATCTCTTGTGTCTACTAATGGATGGATAACGATGCACTGTCTACTACAACA
ATTGGGTAGACAAGTTGTTGTTCAACAGGGTGACCCGGGGAAACGTCAGTTTTTAGTAGAGGCC
AAAGAGATTCGCGATGTCTTGGCAAATGAAACAGTAAGTTCTAATCTATATACCCTGGATATTG
CCTAATTTTGTTTGTGATAACAGTGTCATCAGTCTTCTTTTGCAATATTTTGTAGGGTACTGAA
TCCGTCATAGGTATATCGTTTGACATTTCGAAGATCGAGACGTTATCTATAAGCAAGCGAGCCT
TTAATAGAATGCGTAATCTCAAATTCTTAAATTTCTATAATGGAAGTGTTAGCTTGTTAGAGGA
CATGGAATATCTACCTCGTCTAAGGTTACTTTATTGGGGTTCATACCCGAGAAAAAGTCTTCCT
CTGACATTTAAGCCAGAATGTCTCGTCGAACTCTATATGGGATTCAGCAAGTTGGAGAAGCTAT
GGGGAGGAATCCAGGTTGGTATTTGATACTTGTGATTGTGAATACGTTTGTTTACCAATGATAT
TTAACCTTAGTATGATATTCCTCATTTTTTTGTGTGTTTGACATGCAGCCCCTCACAAATCTAA
AGAAAATAAATTTGGGATATTCCTCTAATTTGAAAGAAATCCCAAATCTTTCGAAAGCCACTAA
CCTCAAGACGTTGACGCTTACCGGTTGTGAGAGTTTGGTGGAGATTCCATCCTCTATTTGGAAT
CTACAGAAACTGGAAATGCTGTATGCGTCAGGATGCATTAAGCTACAAGTTATTCCCACCAACA
TCAACTTAGCATCTCTTGAGGAAGTCAACATGAGTAATTGCTCACGTCTGAGAAGTTTTCCAGA
TATATCTAGTAACATTAAGCGTCTCTATGTAGCAGGCACAATGATTAAAGAATTTCCTGCATCC
ATTGTTGGACACTGGTGTCGTCTTGATTTTCTTCAGATAGGCAGCAGAAGCCTCAAGAGATTAA
CACATGTCCCAGAGAGTGTAACACATCTAGACCTACGCAACAGTGATATAAAGATGATCCCAGA
TTGCGTCATAGGTCTTCCGCATCTAGTATCTCTTCTCGTCGAAAACTGCACAAAACTGGTGTCA
ATTCAGGGTCATTCCCCTTCGCTGGTGACCCTATTTGCAGACCACTGTATATCACTCAAGAGCG
TATGCTGCTCTTTCCACGGACCAATCTCGAAATTGATGTTCTACAACTGTCTGAAACTGGATAA
GGAATCAAAAAGAGGAATCATACAACAATCGGGTAACAAGTCTATATGCTTGCCAGGTAAAGAA
ATCCCTGCAGAGTTCACTCACCAAACTATAGGGAACTTGATAACCATCTCCCTGGCTCCAGGTT
GTGAGGAGGCTTATTCTACGTTCTCAAGATTTAAGGCTTGCCTCCTGCTTTCGCCAATCAAGAA
TTTCGCATTTAATAAGATAAATTGTTTTCTAAGAAGCAAAGGTGTCGAAATTAGTCGCACTACA
GAGTCTATATATCCTTTTGTGTCTGGTGGATCTCTATCAGAACATCTGTTTATCTTTTGTGGCG
ACTTATTTCCTGAAGAAAACAGAAGCCTTATGGACGTGACTCCGAACGAGATTCTGTTTGATTT
CAGCTCCAGTGATGTCGAGATTGTGGAATGTGGTGTAAAGATCTTTTTAAGTAGTGGCATTGAA
GTGGGCTACTGTGAAACTGGAGGCAACAGAAACCACCACATAGATGGAGAAGCAGAAGCGTTTA
AGGTAACTCAAGTTGAAAACAGTAAACATACAGGCCACTGGAGTTGGCTTAGGAAGCTTCGTCT
GGGGAAGAAGAAGATGAAGAATAATAAGACAGAGCTTAGTTCGAGACCAGTCTCAGGATTTAGT
GATCTTACTCGGGGAATCTTTATAAGGTATCAGGAGCCTGAAGCTGTTGAGCTCACTAAAGATG
AAAGAATCACAGATCTTTCGAGTTTACTATGTATTGGTTCCCTTGTGGTCTGTTTTTTTCTTTC
TGTTTTTTTCGGGCAACCCCTTGTGGTCTCTGTTTTGTTGCTTTTTTCTTGCTTCTTTCTTCAG
ATGCAATGAGCTGCATCACAGACAGATCTTGTTGTGTTTGTATGTGCGAAACAAAAAAAGATTT
CAGTTTTCTTGTTCTTATATATACTCCCTCTGGGAGAGGCCTTGTTAATCTATCCAAAGAAGCA
CGATGCTCTTTGGTGCATTGGGGATGCTCATACTTCATATGGGGTTTTGACTCCTGATCAAACT
GAGGCTAGAGATCACTTTGAGAAAGCTACTCTGCTTTTTCAACAAGCTTTGGAGGAGGTAATTA
GTCTCTTTCTTTTGTAATCCTCACCTAATCAAAGTGATTGTTATTTGTTTTTTGTGCGTGGTGT
TTTGTAATTTGAGATGTATATTTACGCAGCAACCGGAGAATGCTCACTATGCGAGATCACTGGA
ATTGGCTTCCAAGGTACATCTTTATTGTTAAAGTTTCCTCAAATTTGTCATGTTTCATCTTTTG
GTTCTGGTTTAAGAAACTGAGATCTACGTGTTGTAGAGGCTTATCTAGTTGTCTTAGCAATAGG
AACTGCGAGGTGGTTTGGTTTGATGGATATATATATAATCACTCATAGACGGAGAAAAATGTAT
CTGAATCATACCTTTATGCCTAGATATGAAGTTTCTTTAGTGTAGAATAAACTCATTGTACAGT
GAAGCAATGGTTATGAATCTTTGGTTTTTGTTCGTTAGACCAATTCTCCTTCTATTTGTGCAAA
AATGCAGGGTCCAGAACTAAATACAGAGGTTCACAAACATGGTTTAGGTCCACAACCATTGGGC
GGCACCGCAGGACCACCATCTACCAGTGCGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.495185162
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017