Detail information of Os06g0547900_circ_g.4


General Information
CircRNA Name Os06g0547900_circ_g.4
ID in PlantcircBase osa_circ_031108
Alias NA
Organism Oryza sativa
Position chr6: 20721014-20723660  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0547900
Parent gene annotation Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-e
ta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1). (Os06t05479
00-01);Similar to Shaggy-related protein kinase eta (EC 2.7.1.-)
(ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1). (Os0
6t0547900-02)
Parent gene strand +
Alternative splicing Os06g0547900_circ_g.1 Os06g0547900_circ_g.2 Os06g0547900_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0547933-00:3
Os06t0547900-01:3
Os06t0547900-02:3
Os06t0547933-00:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGGCATGTGCTCATTCATTTTTTGATGAGTTACGAGAACCACATGCAAAACTGCCAAATGGC
CGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAGAAgttttgggtactccaacgcgagaggaaa
tccgttgtatgaatcccaattacacagaattcaaatttccgcagataaaagcatgcccatggca
caaggtat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTTGGGTACTCCAACGCGAGAGGAAATCCGTTGTATGAATCCCAATTACACAGAATTCAAAT
TTCCGCAGATAAAAGCATGCCCATGGCACAAGGTATGTGGACCACTCTCCTTATACTGCACCAT
TTAAATTCAATACTTCATTGGTGGATTGAGAAGTATCTCCAGTTTGAGTCAACATTGTCAGACA
AATGAAGACGTGAAATTTCAGTGTGCACTATGCATATAACTTGCATCATCCGTTAGGAGTTCCC
CATGAAGTAATTTTGCAATGGTATTACTGCAGATCTTCCACAAGCGAATGCCTCCCGAAGCAAT
AGATCTTGTGTCCCGTCTCCTTCAGTATTCGCCAAATCTGCGATGTACTGCGGTAAGTTTTTGA
TGCTTGATTTCCTGATTGAAACTTGAAAGTATATTAAAATTGCTGCATGCCTATTAAATTTTAC
ACACATTTGAAATTCACTAAAAAGAACCAGATGATAGAACATGGTAATGGTAGTTGTCGCTAGA
CTCGGACTCACAGTGCTCGTTTTGGTTAATTAAAGTTTGTACATCCATGCTAGTGACCCCATTT
CTCATCACGTGGTTGTGTGTGACCCTATATTTCAAATTATGTTGGTAAACGGTTGGTTATTTGG
TGCTAATCAAAAGAATCGAAGAGCTAATGCTGTTCAAGGTTGAGGAAACAACAACAATTCAACA
TTGAGAAATTAAAAAAAAAATGTGTTGCTTGAATTTACTAGGAAACTTGGGTGAAATCAAGATA
GTTTCTGGTTTCTCATTGGGGTTCAGAATTTTCCTGAAATCTACAAAATCAAACCCCAGTGATG
CGAGAACAGTTTGTCCTAAACATTATGCACAGAACAATGCACCATCTTCTATTCATGCCGAGTG
ACCCTGCTTCCTTCTCTTGCCACCCAATGGGCTTGAATGTCTAATGTGCAAGTAAAAAAGAAGA
CAGTTAGGTCATCGGAACCATGAATTCATAGTGTTCTCTGTTAGTTCCTGAAAGGGTCACTTAG
GCCTAGGAAGGACGCCGGGGGGGGGGGGGGGGGGGGTTGAATGGGCTAATTTGAAACTTAAGTA
AATGCGGAAGCAAGGCTTTTCGGAAATTCTGAAAATCACAGAGTAAACGCACAGCTCAAAGTAT
GCTAGATCTAGGTACTCACAAATATGAAGAACAAGCACAAACAGCAACTAGACTAGTAGTGCCA
CAAACAAGCAATGCTAGAGGAGGGAGAGAGGGATTTCACCGAGGTTCTTGCAAGATGAGGTGTT
CCTGAAGTTTGAATACTTGAGGGGATTCTAGTCTCCGTTGAGGAGCTCACCAAGAGCCAGGTCT
TCGCTAACCCTTTCCTCTAGAGGTTGCACAAAACACTCATTCCACTAATGGTAACTCTTTCCTT
TCGGTGGTGAGATCTGACCCTCACAAACTTCTCCTGGCCAACCACAAGTGAATCAGTGGATCAA
GAGTGACACCTAACCGTCCAGGAATCCTCAACTCATACTCAAATAAGTTGTTAGTCCTCTCTAA
TCACATTATTATTAATCACCAAAATAATTAGGGGCCTAGACGCACTTTCAGTTTTCCTTCTTCC
ATTCTTAAAATTCTAATATCACATAATATGCTAGCAATGTATTCCTCATTACTATGATGTATAC
AGTCTAGTAGGGAAGGCATTCACTGGATAATTTTTTATCTCCATGTTAGACATATCGAATATAT
ACAATAGCTTTTATCACTCCCTTCAGCTCTCTTTGTGATTTTGTACTGTTCATGCGTACTTGAT
GTTCTGACATTAATTTGTGGAAAAACTTAGTGTCATGCGCTATGAACTTCTGCTTCACCTGATG
TTATCCACACCCTTCCTTTGTGCATGTTTAGTTGTTTACCTTGTTACTCCCTCCGTTTCACAAT
GTAAGTCATTCTAGCATTTCCCACATTCATATTTATGTTAATGAATCTAGATAGATATATTTGT
CTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAG
GGAGTACAGGTTATGCTCACTATATTCTATTTTAAATCCTCTGAAGTCAAAATAATGTGACATT
TTTAGAGTCTATGCTTCTACTGGTAGGAATGCAAGTGAATAGAGGCATGAAGTACCGACCTATC
CCACCTTTCATGGTTTAACAACTTGCATAAGGGTTGTTGGATTGATTTGGCCCGCTCTCTTAGC
CAATTGAAGAAATATTGGTTTCAAAATTGGAAGTGATGAGTTGATGTTATCACTTGCATTTTCA
CACAGAATTTATGCTTGTCGTAATGTTCATCATACACACGTACAAGTTAGTTAATAAAATAATC
ACCATATCTCAAGCTTTTATCACTTCCTCTCTTGCTCTGAAATTTATCACTTCCTCTCTTGCTC
TGAAATATATTTTCTTTGTCTTGTCTTGTTCCCAATTAGGTCATCTGATATATGATAAAAATAT
TTGGCATGTCCTGCAAGCCTCTTAATTACTCTTTGTGTTATTATTACAGCTGGAGGCATGTGCT
CATTCATTTTTTGATGAGTTACGAGAACCACATGCAAAACTGCCAAATGGCCGTCCGTTTCCGC
CTCTGTTCAACTTTAAGCAAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.104339617
Functional Information
Coding potential Y
Potential coding position 20721051-20723657(+)
20723588-20721050(+)
20723578-20723594(-)
Potential amino acid sequence MNPNYTEFKFPQIKACPWHKIFHKRMPPEAIDLVSRLLQYSPNLRCTALEACAHSFFDELREPH
AKLPNGRPFPPLFNFKQEVLGTPTREEIRCMNPNYTEFKFPQIKACPWHKIFHKRMPPEAIDLV
SRLLQYSPNLRCTALEACAHSFFDELREPHAKLPNGRPFPPLFNFKQEVLGTPTREEIRCMNPN
YTEFKFPQIKACPWHKIFHKRMPPEAIDLVSRLLQYSPNLRCTALEACAHSFFDELREPHAKLP
NGRPFPPLFNFKQEVLGTPTREEIRCMNPNYTEFKFPQIKACPWHKIFHKRMPPEAIDLVSRLL
QYSPNLRCTALEACAHSFFDELREPHAKLPNGRPFPPLFNFKQE(+)
MSYENHMQNCQMAVRFRLCSTLSKKFWVLQRERKSVV*(+)
MSTCLQRSTSQIWRILKETGHKIYCFGRHSLVEDLVPWACFYLRKFEFCVIGIHTTDFLSRWST
QNFLLKVEQRRKRTAIWQFCMWFS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017