Detail information of Os08g0265500_circ_g.7


General Information
CircRNA Name Os08g0265500_circ_g.7
ID in PlantcircBase osa_circ_036548
Alias NA
Organism Oryza sativa
Position chr8: 10101689-10102302  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os08g0265500
Parent gene annotation Similar to ATPase. (Os08t0265500-01)
Parent gene strand +
Alternative splicing Os08g0265500_circ_g.1 Os08g0265500_circ_g.2 Os08g0265500_circ_g.3 Os08g0265500_circ_g.4 Os08g0265500_circ_g.5 Os08g0265500_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0265500-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAACAATACTCACTTCTTAAACAGAAGTTGCAAACATTAATTGGAGATGAGGAACCTAGACCT
CAGACAGTTGAAGTTGTTATGGGACGGCAATTGCAGgtaactgatgttgctgatgctatgatat
tgaaccggctattcagacatttgttcagcaaaggcgttgtatgtgattttttttcactctctta
ttccagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAACTGATGTTGCTGATGCTATGATATTGAACCGGCTATTCAGACATTTGTTCAGCAAAGGCG
TTGTATGTGATTTTTTTTCACTCTCTTATTCCAGTTAAGCAACTTGCAACAGTACCTTAGCATT
TCATATTAATTATCTTGCATGATGATTTTTTTCTCAGATTCTTGTTTCAACGTCTAATCGTGCT
CCGGATCAGCTTTACGAGGGTGGTTTGCAGCGAGACCTTTTCTTACCTTTCATTGACACGTTGA
AAGTATGAGTTAGTTTCACAATTTTTACTGTCAAATCAATTTTATTGTGCATGTTTACTGGACT
CAACTTTTGTGAACCATTTCAGGAAAGGTGCATTGCACATCCCATTGGCTCTGCAGTAGACTAT
CGTCAATTGGGTTCTGTATGTTGCCTATCTTTTCAATATATTACTGTTTAATTTTCTTGTAAAC
CCTTTCCTTTGTTGACATCTTTCATCTGATACATGAACAGGCTGAACAGGGTTTCTATTTTATC
GGAAAACAATACTCACTTCTTAAACAGAAGTTGCAAACATTAATTGGAGATGAGGAACCTAGAC
CTCAGACAGTTGAAGTTGTTATGGGACGGCAATTGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.224618336
Functional Information
Coding potential Y
Potential coding position 10101711-10102299(+)
Potential amino acid sequence MILNRLFRHLFSKGVILVSTSNRAPDQLYEGGLQRDLFLPFIDTLKERCIAHPIGSAVDYRQLG
SAEQGFYFIGKQYSLLKQKLQTLIGDEEPRPQTVEVVMGRQLQVTDVADAMILNRLFRHLFSKG
VILVSTSNRAPDQLYEGGLQRDLFLPFIDTLKERCIAHPIGSAVDYRQLGSAEQGFYFIGKQYS
LLKQKLQTLIGDEEPRPQTVEVVMGRQLQVTDVADAMILNRLFRHLFSKGVILVSTSNRAPDQL
YEGGLQRDLFLPFIDTLKERCIAHPIGSAVDYRQLGSAEQGFYFIGKQYSLLKQKLQTLIGDEE
PRPQTVEVVMGRQLQVTDVADAMILNRLFRHLFSKGVILVSTSNRAPDQLYEGGLQRDLFLPFI
DTLKERCIAHPIGSAVDYRQLGSAEQGFYFIGKQYSLLKQKLQTLIGDEEPRPQTVEVVMGRQL
Q(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017