Plant Circular RNA Database

Detail information of AT2G04865_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT2G04865_circ_g.1
					
						ID in PlantcircBase
						ath_circ_012820
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 1712360-1713797  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							AT2G04865						
					
						Parent gene annotation
						
							Protein MAIN-LIKE 2
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						4
					
						Tissues
						seedlings
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G04865.1:3
AT2G04865.2:3

General Information
CircRNA Name	AT2G04865_circ_g.1
ID in PlantcircBase	ath_circ_012820
Alias	NA
Organism	Arabidpsis thaliana
Position	chr2: 1712360-1713797 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	AT2G04865
Parent gene annotation	Protein MAIN-LIKE 2
Parent gene strand	+
Alternative splicing	NA
Support reads	4
Tissues	seedlings
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G04865.1:3 AT2G04865.2:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CCAAGGTGTTGACGAAGCAGACTACATGAGGTGGTATCTGGGAATTACCCGAAAAATTGTAGGA
AGGCCCATCTCTCTCTCAAGCGAGTTTCAAAGAACGgagcgaggtgcgttgaggtgtcatgagc
atacatcaaagttgggtgagtggaagcttaaaccaaagcagatagaattggtggagagagctgg
ttttgggt

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							GAGCGAGGTGCGTTGAGGTGTCATGAGCATACATCAAAGTTGGGTGAGTGGAAGCTTAAACCAA
AGCAGATAGAATTGGTGGAGAGAGCTGGTTTTGGGTTTTTGAGACGGATCCCTGCTATTAGTCT
TGATAACCCTCTTATCTCTGCGTTGGTTGAGCGATGGAGGAGAGAGACCAACACTTTTCACTTC
ACTGTTGGGGAAATGACTGTGACTCTTGAGGACATTGCCTTGTTACTGGGATTGGGGATTGATG
GTAAACCTGTCATTGGATTAACGTATACAACTTGTTCTGCGGTATGTGAGAGGTACTTAGGAAA
GTCACCAGCATCTAATTCCGCTAGTGGTGGGATGGTTAAGCTTAGCTGGTTGAAAGATAATTTC
TCTGAATGTCCTGATGATGCATCTTTTGAAGAAGTTGAGCGCCGTACACGGGCTTACCTTTTGT
ACTTAGTAGGGAGTACCATCTTCTCTACAACCACTGGAAACAAGGTGCCTGTTATGTATCTTCC
GCTGTTTGAGGATTTTGATGATGCTGGAACATTTGCTTGGGGTGCTGCTGCTTTGGCTTTCTTG
TATAGAGCACTTGGGAATGCTTCTGTTAAATCCCAAAGCACGATATGTGGTTGCTTGACGCTAT
TACAGGTACTTAAGGTTTTTCATTTCCTGTTCTTTAAACTGTTGATCCAAGAGGATATTATTAC
CGAACCTATCCAGAATGTCTCTGCTAGTTTCAGCATTGAATACATTGACTTAATCTTCTTTCCT
TATCTTCTGTTTCCTGTAGTGTTGGAGTTACTATCACTTAAACATTGGCAGGCCAAAGCTGAAT
CGTGAGCCCATCCATGATCAGTTCCCATTTGTGCTTAAGTGGAAGGGGAAGCAAAATGGTCCTA
CAGCAAACCGTGATGTGGTCTTTTACCGCAAAGCATTGGACGTCATGAAGCCAACTGATGTAAG
TTTGTTTATCTTTCATATTCATCAGCTACTCTTCTTTGTGTATACTTCTGTTGATCTAATGTTG
CTGATATACCTTGGGAATTAGGTGGTGTGGCTTCCGTATGAAAATATGAATGGAGGAGATATGT
CAGACCGTATGAGAAAGTCTCTGCTGCTGGGTAGATCGAAAACAATGCTGATATCTTTTGACAA
GGCGGAGAGACATCTGCCTGATCGCTGTCGCAAACAATTTGACTTGTTTCAAGACATCCCAGCA
GATGTGCAAAGGTGGGTAAGAAAGTCTCGGGGAGTTGATGGAGGGGTTGACCTGTCGAATAAAA
TGGAATCAGAGTTAAGCGAATGGGAAATGAGGTGGGAAAACATTGTACCTGACGATGTCCAAGG
TGTTGACGAAGCAGACTACATGAGGTGGTATCTGGGAATTACCCGAAAAATTGTAGGAAGGCCC
ATCTCTCTCTCAAGCGAGTTTCAAAGAACG

Sequences
Splice junction sequence	CCAAGGTGTTGACGAAGCAGACTACATGAGGTGGTATCTGGGAATTACCCGAAAAATTGTAGGA AGGCCCATCTCTCTCTCAAGCGAGTTTCAAAGAACGgagcgaggtgcgttgaggtgtcatgagc atacatcaaagttgggtgagtggaagcttaaaccaaagcagatagaattggtggagagagctgg ttttgggt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GAGCGAGGTGCGTTGAGGTGTCATGAGCATACATCAAAGTTGGGTGAGTGGAAGCTTAAACCAA AGCAGATAGAATTGGTGGAGAGAGCTGGTTTTGGGTTTTTGAGACGGATCCCTGCTATTAGTCT TGATAACCCTCTTATCTCTGCGTTGGTTGAGCGATGGAGGAGAGAGACCAACACTTTTCACTTC ACTGTTGGGGAAATGACTGTGACTCTTGAGGACATTGCCTTGTTACTGGGATTGGGGATTGATG GTAAACCTGTCATTGGATTAACGTATACAACTTGTTCTGCGGTATGTGAGAGGTACTTAGGAAA GTCACCAGCATCTAATTCCGCTAGTGGTGGGATGGTTAAGCTTAGCTGGTTGAAAGATAATTTC TCTGAATGTCCTGATGATGCATCTTTTGAAGAAGTTGAGCGCCGTACACGGGCTTACCTTTTGT ACTTAGTAGGGAGTACCATCTTCTCTACAACCACTGGAAACAAGGTGCCTGTTATGTATCTTCC GCTGTTTGAGGATTTTGATGATGCTGGAACATTTGCTTGGGGTGCTGCTGCTTTGGCTTTCTTG TATAGAGCACTTGGGAATGCTTCTGTTAAATCCCAAAGCACGATATGTGGTTGCTTGACGCTAT TACAGGTACTTAAGGTTTTTCATTTCCTGTTCTTTAAACTGTTGATCCAAGAGGATATTATTAC CGAACCTATCCAGAATGTCTCTGCTAGTTTCAGCATTGAATACATTGACTTAATCTTCTTTCCT TATCTTCTGTTTCCTGTAGTGTTGGAGTTACTATCACTTAAACATTGGCAGGCCAAAGCTGAAT CGTGAGCCCATCCATGATCAGTTCCCATTTGTGCTTAAGTGGAAGGGGAAGCAAAATGGTCCTA CAGCAAACCGTGATGTGGTCTTTTACCGCAAAGCATTGGACGTCATGAAGCCAACTGATGTAAG TTTGTTTATCTTTCATATTCATCAGCTACTCTTCTTTGTGTATACTTCTGTTGATCTAATGTTG CTGATATACCTTGGGAATTAGGTGGTGTGGCTTCCGTATGAAAATATGAATGGAGGAGATATGT CAGACCGTATGAGAAAGTCTCTGCTGCTGGGTAGATCGAAAACAATGCTGATATCTTTTGACAA GGCGGAGAGACATCTGCCTGATCGCTGTCGCAAACAATTTGACTTGTTTCAAGACATCCCAGCA GATGTGCAAAGGTGGGTAAGAAAGTCTCGGGGAGTTGATGGAGGGGTTGACCTGTCGAATAAAA TGGAATCAGAGTTAAGCGAATGGGAAATGAGGTGGGAAAACATTGTACCTGACGATGTCCAAGG TGTTGACGAAGCAGACTACATGAGGTGGTATCTGGGAATTACCCGAAAAATTGTAGGAAGGCCC ATCTCTCTCTCAAGCGAGTTTCAAAGAACG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.194565978

Conservation Information
Conserved circRNAs	NA
PMCS	0.194565978

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							1712564-1713794(+)
						
					

						Potential amino acid sequence
						
							MTVTLEDIALLLGLGIDGKPVIGLTYTTCSAVCERYLGKSPASNSASGGMVKLSWLKDNFSECP
DDASFEEVERRTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDDAGTFAWGAAALAFLYRAL
GNASVKSQSTICGCLTLLQCWSYYHLNIGRPKLNREPIHDQFPFVLKWKGKQNGPTANRDVVFY
RKALDVMKPTDVVWLPYENMNGGDMSDRMRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQ
DIPADVQRWVRKSRGVDGGVDLSNKMESELSEWEMRWENIVPDDVQGVDEADYMRWYLGITRKI
VGRPISLSSEFQRTERGALRCHEHTSKLGEWKLKPKQIELVERAGFGFLRRIPAISLDNPLISA
LVERWRRETNTFHFTVGEMTVTLEDIALLLGLGIDGKPVIGLTYTTCSAVCERYLGKSPASNSA
SGGMVKLSWLKDNFSECPDDASFEEVERRTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDD
AGTFAWGAAALAFLYRALGNASVKSQSTICGCLTLLQCWSYYHLNIGRPKLNREPIHDQFPFVL
KWKGKQNGPTANRDVVFYRKALDVMKPTDVVWLPYENMNGGDMSDRMRKSLLLGRSKTMLISFD
KAERHLPDRCRKQFDLFQDIPADVQRWVRKSRGVDGGVDLSNKMESELSEWEMRWENIVPDDVQ
GVDEADYMRWYLGITRKIVGRPISLSSEFQRTERGALRCHEHTSKLGEWKLKPKQIELVERAGF
GFLRRIPAISLDNPLISALVERWRRETNTFHFTVGEMTVTLEDIALLLGLGIDGKPVIGLTYTT
CSAVCERYLGKSPASNSASGGMVKLSWLKDNFSECPDDASFEEVERRTRAYLLYLVGSTIFSTT
TGNKVPVMYLPLFEDFDDAGTFAWGAAALAFLYRALGNASVKSQSTICGCLTLLQCWSYYHLNI
GRPKLNREPIHDQFPFVLKWKGKQNGPTANRDVVFYRKALDVMKPTDVVWLPYENMNGGDMSDR
MRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQDIPADVQRWVRKSRGVDGGVDLSNKMES
ELSEWEMRWENIVPDDVQGVDEADYMRWYLGITRKIVGRPISLSSEFQRTERGALRCHEHTSKL
GEWKLKPKQIELVERAGFGFLRRIPAISLDNPLISALVERWRRETNTFHFTVGEMTVTLEDIAL
LLGLGIDGKPVIGLTYTTCSAVCERYLGKSPASNSASGGMVKLSWLKDNFSECPDDASFEEVER
RTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDDAGTFAWGAAALAFLYRALGNASVKSQST
ICGCLTLLQCWSYYHLNIGRPKLNREPIHDQFPFVLKWKGKQNGPTANRDVVFYRKALDVMKPT
DVVWLPYENMNGGDMSDRMRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQDIPADVQRWV
RKSRGVDGGVDLSNKMESELSEWEMRWENIVPDDVQGVDEADYMRWYLGITRKIVGRPISLSSE
FQRT(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	1712564-1713794(+)
Potential amino acid sequence	MTVTLEDIALLLGLGIDGKPVIGLTYTTCSAVCERYLGKSPASNSASGGMVKLSWLKDNFSECP DDASFEEVERRTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDDAGTFAWGAAALAFLYRAL GNASVKSQSTICGCLTLLQCWSYYHLNIGRPKLNREPIHDQFPFVLKWKGKQNGPTANRDVVFY RKALDVMKPTDVVWLPYENMNGGDMSDRMRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQ DIPADVQRWVRKSRGVDGGVDLSNKMESELSEWEMRWENIVPDDVQGVDEADYMRWYLGITRKI VGRPISLSSEFQRTERGALRCHEHTSKLGEWKLKPKQIELVERAGFGFLRRIPAISLDNPLISA LVERWRRETNTFHFTVGEMTVTLEDIALLLGLGIDGKPVIGLTYTTCSAVCERYLGKSPASNSA SGGMVKLSWLKDNFSECPDDASFEEVERRTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDD AGTFAWGAAALAFLYRALGNASVKSQSTICGCLTLLQCWSYYHLNIGRPKLNREPIHDQFPFVL KWKGKQNGPTANRDVVFYRKALDVMKPTDVVWLPYENMNGGDMSDRMRKSLLLGRSKTMLISFD KAERHLPDRCRKQFDLFQDIPADVQRWVRKSRGVDGGVDLSNKMESELSEWEMRWENIVPDDVQ GVDEADYMRWYLGITRKIVGRPISLSSEFQRTERGALRCHEHTSKLGEWKLKPKQIELVERAGF GFLRRIPAISLDNPLISALVERWRRETNTFHFTVGEMTVTLEDIALLLGLGIDGKPVIGLTYTT CSAVCERYLGKSPASNSASGGMVKLSWLKDNFSECPDDASFEEVERRTRAYLLYLVGSTIFSTT TGNKVPVMYLPLFEDFDDAGTFAWGAAALAFLYRALGNASVKSQSTICGCLTLLQCWSYYHLNI GRPKLNREPIHDQFPFVLKWKGKQNGPTANRDVVFYRKALDVMKPTDVVWLPYENMNGGDMSDR MRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQDIPADVQRWVRKSRGVDGGVDLSNKMES ELSEWEMRWENIVPDDVQGVDEADYMRWYLGITRKIVGRPISLSSEFQRTERGALRCHEHTSKL GEWKLKPKQIELVERAGFGFLRRIPAISLDNPLISALVERWRRETNTFHFTVGEMTVTLEDIAL LLGLGIDGKPVIGLTYTTCSAVCERYLGKSPASNSASGGMVKLSWLKDNFSECPDDASFEEVER RTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDDAGTFAWGAAALAFLYRALGNASVKSQST ICGCLTLLQCWSYYHLNIGRPKLNREPIHDQFPFVLKWKGKQNGPTANRDVVFYRKALDVMKPT DVVWLPYENMNGGDMSDRMRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQDIPADVQRWV RKSRGVDGGVDLSNKMESELSEWEMRWENIVPDDVQGVDEADYMRWYLGITRKIVGRPISLSSE FQRT(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Pan et al., 2017

circRNA

Detail information of AT2G04865_circ_g.1

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