Detail information of AT2G04865_circ_g.1


General Information
CircRNA Name AT2G04865_circ_g.1
ID in PlantcircBase ath_circ_012820
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1712360-1713797  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G04865
Parent gene annotation Protein MAIN-LIKE 2
Parent gene strand +
Alternative splicing NA
Support reads 4
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04865.1:3
AT2G04865.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAGGTGTTGACGAAGCAGACTACATGAGGTGGTATCTGGGAATTACCCGAAAAATTGTAGGA
AGGCCCATCTCTCTCTCAAGCGAGTTTCAAAGAACGgagcgaggtgcgttgaggtgtcatgagc
atacatcaaagttgggtgagtggaagcttaaaccaaagcagatagaattggtggagagagctgg
ttttgggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCGAGGTGCGTTGAGGTGTCATGAGCATACATCAAAGTTGGGTGAGTGGAAGCTTAAACCAA
AGCAGATAGAATTGGTGGAGAGAGCTGGTTTTGGGTTTTTGAGACGGATCCCTGCTATTAGTCT
TGATAACCCTCTTATCTCTGCGTTGGTTGAGCGATGGAGGAGAGAGACCAACACTTTTCACTTC
ACTGTTGGGGAAATGACTGTGACTCTTGAGGACATTGCCTTGTTACTGGGATTGGGGATTGATG
GTAAACCTGTCATTGGATTAACGTATACAACTTGTTCTGCGGTATGTGAGAGGTACTTAGGAAA
GTCACCAGCATCTAATTCCGCTAGTGGTGGGATGGTTAAGCTTAGCTGGTTGAAAGATAATTTC
TCTGAATGTCCTGATGATGCATCTTTTGAAGAAGTTGAGCGCCGTACACGGGCTTACCTTTTGT
ACTTAGTAGGGAGTACCATCTTCTCTACAACCACTGGAAACAAGGTGCCTGTTATGTATCTTCC
GCTGTTTGAGGATTTTGATGATGCTGGAACATTTGCTTGGGGTGCTGCTGCTTTGGCTTTCTTG
TATAGAGCACTTGGGAATGCTTCTGTTAAATCCCAAAGCACGATATGTGGTTGCTTGACGCTAT
TACAGGTACTTAAGGTTTTTCATTTCCTGTTCTTTAAACTGTTGATCCAAGAGGATATTATTAC
CGAACCTATCCAGAATGTCTCTGCTAGTTTCAGCATTGAATACATTGACTTAATCTTCTTTCCT
TATCTTCTGTTTCCTGTAGTGTTGGAGTTACTATCACTTAAACATTGGCAGGCCAAAGCTGAAT
CGTGAGCCCATCCATGATCAGTTCCCATTTGTGCTTAAGTGGAAGGGGAAGCAAAATGGTCCTA
CAGCAAACCGTGATGTGGTCTTTTACCGCAAAGCATTGGACGTCATGAAGCCAACTGATGTAAG
TTTGTTTATCTTTCATATTCATCAGCTACTCTTCTTTGTGTATACTTCTGTTGATCTAATGTTG
CTGATATACCTTGGGAATTAGGTGGTGTGGCTTCCGTATGAAAATATGAATGGAGGAGATATGT
CAGACCGTATGAGAAAGTCTCTGCTGCTGGGTAGATCGAAAACAATGCTGATATCTTTTGACAA
GGCGGAGAGACATCTGCCTGATCGCTGTCGCAAACAATTTGACTTGTTTCAAGACATCCCAGCA
GATGTGCAAAGGTGGGTAAGAAAGTCTCGGGGAGTTGATGGAGGGGTTGACCTGTCGAATAAAA
TGGAATCAGAGTTAAGCGAATGGGAAATGAGGTGGGAAAACATTGTACCTGACGATGTCCAAGG
TGTTGACGAAGCAGACTACATGAGGTGGTATCTGGGAATTACCCGAAAAATTGTAGGAAGGCCC
ATCTCTCTCTCAAGCGAGTTTCAAAGAACG
Conservation Information
Conserved circRNAs NA
PMCS 0.194565978
Functional Information
Coding potential Y
Potential coding position 1712564-1713794(+)
Potential amino acid sequence MTVTLEDIALLLGLGIDGKPVIGLTYTTCSAVCERYLGKSPASNSASGGMVKLSWLKDNFSECP
DDASFEEVERRTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDDAGTFAWGAAALAFLYRAL
GNASVKSQSTICGCLTLLQCWSYYHLNIGRPKLNREPIHDQFPFVLKWKGKQNGPTANRDVVFY
RKALDVMKPTDVVWLPYENMNGGDMSDRMRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQ
DIPADVQRWVRKSRGVDGGVDLSNKMESELSEWEMRWENIVPDDVQGVDEADYMRWYLGITRKI
VGRPISLSSEFQRTERGALRCHEHTSKLGEWKLKPKQIELVERAGFGFLRRIPAISLDNPLISA
LVERWRRETNTFHFTVGEMTVTLEDIALLLGLGIDGKPVIGLTYTTCSAVCERYLGKSPASNSA
SGGMVKLSWLKDNFSECPDDASFEEVERRTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDD
AGTFAWGAAALAFLYRALGNASVKSQSTICGCLTLLQCWSYYHLNIGRPKLNREPIHDQFPFVL
KWKGKQNGPTANRDVVFYRKALDVMKPTDVVWLPYENMNGGDMSDRMRKSLLLGRSKTMLISFD
KAERHLPDRCRKQFDLFQDIPADVQRWVRKSRGVDGGVDLSNKMESELSEWEMRWENIVPDDVQ
GVDEADYMRWYLGITRKIVGRPISLSSEFQRTERGALRCHEHTSKLGEWKLKPKQIELVERAGF
GFLRRIPAISLDNPLISALVERWRRETNTFHFTVGEMTVTLEDIALLLGLGIDGKPVIGLTYTT
CSAVCERYLGKSPASNSASGGMVKLSWLKDNFSECPDDASFEEVERRTRAYLLYLVGSTIFSTT
TGNKVPVMYLPLFEDFDDAGTFAWGAAALAFLYRALGNASVKSQSTICGCLTLLQCWSYYHLNI
GRPKLNREPIHDQFPFVLKWKGKQNGPTANRDVVFYRKALDVMKPTDVVWLPYENMNGGDMSDR
MRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQDIPADVQRWVRKSRGVDGGVDLSNKMES
ELSEWEMRWENIVPDDVQGVDEADYMRWYLGITRKIVGRPISLSSEFQRTERGALRCHEHTSKL
GEWKLKPKQIELVERAGFGFLRRIPAISLDNPLISALVERWRRETNTFHFTVGEMTVTLEDIAL
LLGLGIDGKPVIGLTYTTCSAVCERYLGKSPASNSASGGMVKLSWLKDNFSECPDDASFEEVER
RTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDFDDAGTFAWGAAALAFLYRALGNASVKSQST
ICGCLTLLQCWSYYHLNIGRPKLNREPIHDQFPFVLKWKGKQNGPTANRDVVFYRKALDVMKPT
DVVWLPYENMNGGDMSDRMRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQDIPADVQRWV
RKSRGVDGGVDLSNKMESELSEWEMRWENIVPDDVQGVDEADYMRWYLGITRKIVGRPISLSSE
FQRT(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017