Detail information of Os08g0110700_circ_g.2


General Information
CircRNA Name Os08g0110700_circ_g.2
ID in PlantcircBase osa_circ_035596
Alias NA
Organism Oryza sativa
Position chr8: 564733-567538  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0110700
Parent gene annotation DDHD domain containing protein. (Os08t0110700-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0110700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTTACACGGCGGAAATCAACAACATCATCAACAAGATTAGCTTTCTCCAACCTCTGGCCAAT
GCCATGAACCATAAATACTAGATGACCAACTGGAACctcttctttcaatgatgatatcaatgta
tctttgtcagggacatccgcatggactccctcagcagatcttgaaatgatacaactgtcaatgt
cttttgct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 915
Transcript exons: 564733-565260,565362-565427,566503-566652,567368-567538
CTCTTCTTTCAATGATGATATCAATGTATCTTTGTCAGGGACATCCGCATGGACTCCCTCAGCA
GATCTTGAAATGATACAACTGTCAATGTCTTTTGCTCTTACAGATGAATTGTCCCCTTCTTCAC
TGCATGCAATTTTATGATTGTCGACCTGTTTTTCGACTTCAATTTGTTCTCCATCTACTGCTGT
AGGTAGTGCATCTGTGGTAAGTTTCGGTGAATTTTCAAGTGCACATGTTGGGAGGGTGGTGTCC
TCTGTACATGAAGTGCCAGTTCTGGTGCTCCCTTCATCAACTACATCATTTACATTATCAGCAC
AAGAATGCCCAGAAATGGAAGATGTATCTTGCTCCTTCATGACTGATTCATGTGCAGTAACTGT
GTCAGGCGATTTTGCTATGTGACCTTCATCAGAAGAAACTTCCATATTCATATAATCTACTGGA
AATGGTGCAGAAGAAGATTCTTGGTGGCAAAGTATGTCATAAGATAGAACACTTCCTAACGAGT
GCCCATATATTGAAACCTTTCCACTATAACCAGGATTTCTCTTGATAAACTTTGTGTACAACTG
GTTCAACTGGTTTGAGACCGAGTCAATTATGTGCTGACAGTATATAGGACTCATGTAATACAGA
ACATCATGAACTGTGGCACCTAATGCTACACGAAGACCTTTAACTCCATCCAAAGTGATTTTCT
CAACCGATTGTTCACCACTGAGCTTTAGGCTCTTTCTCCACTGACAAGGAATAAACAGAACCCT
CTGGGTACTTCTTTGATAAGGAGTTAAGTATCTTTCAGCTAAATTAGCAGTTACACGGCGGAAA
TCAACAACATCATCAACAAGATTAGCTTTCTCCAACCTCTGGCCAATGCCATGAACCATAAATA
CTAGATGACCAACTGGAAC

Genomic sequence CTCTTCTTTCAATGATGATATCAATGTATCTTTGTCAGGGACATCCGCATGGACTCCCTCAGCA
GATCTTGAAATGATACAACTGTCAATGTCTTTTGCTCTTACAGATGAATTGTCCCCTTCTTCAC
TGCATGCAATTTTATGATTGTCGACCTGTTTTTCGACTTCAATTTGTTCTCCATCTACTGCTGT
AGGTAGTGCATCTGTGGTAAGTTTCGGTGAATTTTCAAGTGCACATGTTGGGAGGGTGGTGTCC
TCTGTACATGAAGTGCCAGTTCTGGTGCTCCCTTCATCAACTACATCATTTACATTATCAGCAC
AAGAATGCCCAGAAATGGAAGATGTATCTTGCTCCTTCATGACTGATTCATGTGCAGTAACTGT
GTCAGGCGATTTTGCTATGTGACCTTCATCAGAAGAAACTTCCATATTCATATAATCTACTGGA
AATGGTGCAGAAGAAGATTCTTGGTGGCAAAGTATGTCATAAGATAGAACACTTCCTAACGAGT
GCCCATATATTGAAACCTGCAAAAACAAGAAAGGAACACATAAGTTTTTTTGTTTAACCATTAG
CAGAAATGCAAGTGCACTCCTAAAGATATTTCCGAAGGGTGATGTGTGCAAACCTTTCCACTAT
AACCAGGATTTCTCTTGATAAACTTTGTGTACAACTGGTTCAACTGGTTTGAGACCTGTTGCAG
ACTTAAATCCTCAATTTTATATAACGAGTAAAAAATATGCTTCCAGTCATTACGATCAAAATTT
TTGAACAGTACAGGAAATGGCACATAATTATTTAGCGTATTTTTCGGAAAGGGTGAATCTGAAC
CATCCAAGTCATTAGACTTTACTTTTTTCTTCAAATTTAAATTAAACCATAAAAATGCATAGAG
AAATCCCACTATTACATACAGGCCCACAAGGCTCCTAACATAGTAATATGCACTTAAGGGAAAA
GAAGGAAATTGGAACAGGCAGATGGGATGACTGAGTAGAACTGGATGTTGGCAATGTTCACTTC
AGATCATATGGATAAACAGCAATGTCAACAGCAGGGGCATCAAACATTCAATTTAACATTCACA
TATTTATCAATTAATAAAGGATATGTGTCAAAAGCAGTAAATATTTCAGTAAGCTGATTTGTTT
CCAATTAAGGAACGAACGATGATTGCTAACCTAACTGAGTTTTCCATCAAGCCAAATGCCCATG
CCATGCAACATAATACGATATGTTTTACTATAGTGTATTAATGTGTACAGAATCATTGGACTAC
ATATATTGGGAGGGTATATGCAGAGAAGTTCACCAGAAAATGCTTAATTGGTGGGAGGTAGGTG
ACAGGGGTAGTTATTCATTTCATTTTTTTCTGAGAAGTGGGGTTTGGAATGTGGATATTATTTA
GGCAGAGAAGTAGCTGGACAACCTCCCTCTTTGTAATATTAGATAGAAAAGTAACAACTTTCCA
TATGAGAAAAGGAACACAGTGTTTGATTCATTTCTGAAATCTTACTAGAAAAATTCATCAGCAA
TCTATTAGTTCCACAACTCCATGACAGTGTACTCTAGTTCACCTATTATGTTCCCACCCAACAT
GTGGGCTTTAATGCATGTTTTTATGCAGCATTTATTTGAAGCCGGATGCTAGAACAGCAAATAT
ACTCATAATGCTTGAAAAAGGACTACTAAGAAAACCTAAAACACCGAAATACTATCAACGAAAC
TACAGAAATGGCTAAAAGCAGTGTTACAATAAAGCAACATACCGAGTCAATTATGTGCTGACAG
TATATAGGACTCATGTAATACAGAACATCATGAACTGTGGCACCTAATGCTACACGAAGACCTT
TAACTCCATCCAAAGTGATTTTCTCAACCGATTGTTCACCACTGAGCTTTAGGCTCTTTCTCCA
CTGCAATAAAACATCAGGGTTAAAAACTCAAGTTGCCGGTAATTATGGAGATGCAGCTAGATGC
CAGGTGCCATATGATGGTATTTTAATCTGAAAAACATGCTTTTATTATAACTAGATACATAAAA
GAAATTTCTGGCTAACTTAACAACTGAGTTCAGATGCAATAAAGATCATGACATGTGTGCACAA
GTGTACAAATAAATTGTGGTGCCCGTGAGCATTTGATAGTAAAATATATCTCACTTTTCTGATC
AATGACCAAAATTCAAAACTACAATTTGCATCTCTCGCTTTTGTTCAATGGCCACCATTCAAAA
TAAAGACTGTCAAGTTATTGTGGTTATAGCGTATGGTAAAGTAGTTCAAAACGAGACCAAGCAT
ATGTCAACTCACTTTTCTGATAGTAATAAATATATCTCACTTTCCTGATCAATGGCCAAAATTC
AAAACTACCATTTGCATCTCTCGCTTTTGCTCAATGGTCACCATTCAAAAGTAAAGACTGTCAA
GTTAATGTGGTTGTAACGTATGGTAAAGTAGTTCAAAACAAGACCAAGCATATGTCAACTCAGC
ATGCCTGAATATGGAGTTAAAGGCTTGCTTTATCATGCTAAAGCAAGAACAAGTATTTTTCTTA
TCTGAAATGAGGCACAAGAATGACATACATTTCAACCAAAATGAGTCTATGGCATGAGTAACTT
TGAGTTCTTACCTGACAAGGAATAAACAGAACCCTCTGGGTACTTCTTTGATAAGGAGTTAAGT
ATCTTTCAGCTAAATTAGCAGTTACACGGCGGAAATCAACAACATCATCAACAAGATTAGCTTT
CTCCAACCTCTGGCCAATGCCATGAACCATAAATACTAGATGACCAACTGGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.210492676
Functional Information
Coding potential Y
Potential coding position 567516-564735(-)
Potential amino acid sequence MVHGIGQRLEKANLVDDVVDFRRVTANLAERYLTPYQRSTQRVLFIPCQWRKSLKLSGEQSVEK
ITLDGVKGLRVALGATVHDVLYYMSPIYCQHIIDSVSNQLNQLYTKFIKRNPGYSGKVSIYGHS
LGSVLSYDILCHQESSSAPFPVDYMNMEVSSDEGHIAKSPDTVTAHESVMKEQDTSSISGHSCA
DNVNDVVDEGSTRTGTSCTEDTTLPTCALENSPKLTTDALPTAVDGEQIEVEKQVDNHKIACSE
EGDNSSVRAKDIDSCIISRSAEGVHADVPDKDTLISSLKEEVPVGHLVFMVHGIGQRLEKANLV
DDVVDFRRVTANLAERYLTPYQRSTQRVLFIPCQWRKSLKLSGEQSVEKITLDGVKGLRVALGA
TVHDVLYYMSPIYCQHIIDSVSNQLNQLYTKFIKRNPGYSGKVSIYGHSLGSVLSYDILCHQES
SSAPFPVDYMNMEVSSDEGHIAKSPDTVTAHESVMKEQDTSSISGHSCADNVNDVVDEGSTRTG
TSCTEDTTLPTCALENSPKLTTDALPTAVDGEQIEVEKQVDNHKIACSEEGDNSSVRAKDIDSC
IISRSAEGVHADVPDKDTLISSLKEEVPVGHLVFMVHGIGQRLEKANLVDDVVDFRRVTANLAE
RYLTPYQRSTQRVLFIPCQWRKSLKLSGEQSVEKITLDGVKGLRVALGATVHDVLYYMSPIYCQ
HIIDSVSNQLNQLYTKFIKRNPGYSGKVSIYGHSLGSVLSYDILCHQESSSAPFPVDYMNMEVS
SDEGHIAKSPDTVTAHESVMKEQDTSSISGHSCADNVNDVVDEGSTRTGTSCTEDTTLPTCALE
NSPKLTTDALPTAVDGEQIEVEKQVDNHKIACSEEGDNSSVRAKDIDSCIISRSAEGVHADVPD
KDTLISSLKEEVPVGHLVFMVHGIGQRLEKANLVDDVVDFRRVTANLAERYLTPYQRSTQRVLF
IPCQWRKSLKLSGEQSVEKITLDGVKGLRVALGATVHDVLYYMSPIYCQHIIDSVSNQLNQLYT
KFIKRNPGYSGKVSIYGHSLGSVLSYDILCHQESSSAPFPVDYMNMEVSSDEGHIAKSPDTVTA
HESVMKEQDTSSISGHSCADNVNDVVDEGSTRTGTSCTEDTTLPTCALENSPKLTTDALPTAVD
GEQIEVEKQVDNHKIACSEEGDNSSVRAKDIDSCIISRSAEGVHADVPDKDTLISSLKEE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017