Detail information of Os09g0371100_circ_ag.3


General Information
CircRNA Name Os09g0371100_circ_ag.3
ID in PlantcircBase osa_circ_039015
Alias Os_ciR309
Organism Oryza sativa
Position chr9: 12358506-12362995  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os09g0371100_circ_ag.1 Os09g0371100_circ_ag.2
Support reads 126
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTGGGTCTCCCTGATGATCCATCCAAGGGATTTGCCTATGGCATTGTGCTGTTCATTATGGG
CGTATTCATCTCTTGGAATGGTCCTGCTACAAACTTgcctatttgtgcagagatcgtacctgag
aagtcaagaacaagtatctatgctcttgacatgtgttttaagtccgtactgtcatctttcgctc
cccctatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCTATTTGTGCAGAGATCGTACCTGAGAAGTCAAGAACAAGTATCTATGCTCTTGACATGTGT
TTTAAGTCCGTACTGTCATCTTTCGCTCCCCCTATTGTTGGCATTTTAGCTCAGCGAGTGTTTG
GATACAGGGCAGATGACAAAGGAAAGAGTATTCAGTTAGACAGGGAGAATGCTGCATCTTTAGC
CAAGGCATTGTACACATCTATTGCAATACCATTTACAATTTGCACCTCCATATACTCGTTCCTG
TACTGCAGTTATCCCCGGGATAGAGAGCGTGCACGTATGCAATCTCTGATAGAATCTGAATTGC
AGCAGATGGAGCAGGAAAGTTTTTGTTTGGAAGATGGGGATTGTCGTTTTCAGGTTTTTGACTC
AGCTAATGGTGAATTAGAACTGACCTATGATGTGAAGGATTTACCTGATACTGAAAAGGATACT
GCAAAACTACTGGCGAACAGGGAATCCTAATAGCAAAGGAGAACTTTAAGCTTGTCAATTTATT
AGGCAAATGTTATGAATTCTACAATGCCTATTTTTTATAAAACTAGTCTTCTTATTTAGCCATT
TAGAAATTGTAGATTGGGGACCTATCTGTTGGTCAGTTAGTGTTAGATTGAATCTAGTTGTTTT
TTTTTTGTCCATTTGTTGTTGAGAAGATCTGATATACTCCCTCCGTATTTTAATGTATGACGCC
GTTGACTTTTCAACCAACGTTTGACCATTCGTTATATTCAAAATTTTTGTGCAAATATGAAAAT
ATTTATATCATGCTTAAAGAACATTTGATGACGAATCAAGTCACAATAAAATAAATGATAATTA
CATAATTTTTTTGAATAAAACGAATGGTCAAGCATTAGACAATAAGTCAACGGTGCCATACATT
AAAATATGGAGGTAGTACAACACGATGAATCTGATATTTTCAAACATGTACTAATGTTACAAAT
TTTACACCAAAGCTGGAGCTGTAGAATGTTAAGCAAAGCAATTGCTTTATTATATTTTAGTACT
TGTAACAATTTTTCAATGGTAAAGTAGAACCAGCGGTTTTTCCCGCGTAAATTTACGTGGAGCT
AGTATTAAAATAAAGTGGATTTGATATACAATTATTAGTTTTTATCCACATATGCATTTTGTAG
ACAAGGTGTTCTCCCATCCTATGAATGTATTATGTAATGTAATGTAACTATACAAAGTTAAAAG
AATTGAATGTCCAGTACATCCACGGTAAGATCACAAGCGAGCCGATTATATTAGCTGCTGATGG
ATGCGTATAATAAGGATGTAAGTGGCTAACCCGCAAAATCAATTTATAGATCAAAATAAGCTGC
AAACCCATTTATTTTAACCTATAAGTGGGTTCACTTGTTAGCCACTGTGACCCAAGATGCATAC
CTAGTGCCACTTAAGCAAAATGGGTATAGTGGATCAGAAGATGGTTGAAGTCAAAACACAAGAG
TTCTTTCCTCCACTTTCCCAATTCACCTCCGTTGTTTTCCACGCGCACGCTTTTCAAACTGCTA
AATGGTGCGTTTTTTTGTAAAAAATTTCTATACGAAAGTTACATAAAAAAATCATATTGACCCA
TTTCTGAAAAAAATTAGCAAATACTTAATTAATTATGCGCTAATGAACCGCTCCGTTTTCTACG
CGGATAGCTTGGGTTGGTAACCATGTGTTCCGAACACAGATTATTTGTGGCAGCCATGGTGCAC
ATGTTGTCAAACCATAAGATAGTCATACAAAACCAAAGTGTCAGGAAAAAAAAAGACATTAATT
TGCTATACTTTGAGCGGGAATTACTATGCTTCATCCAAGTAATCTGTAGTTTCTGTACCCAAGT
CACCTCCAACCAGGCCCCACAAGAAACAGACCAATGGGAAGCGTCCCAAGTATCTCTCGCCTCA
ACGCTTTCCAATTCCACCCCGACTTGCTGACCTCGACAGCACCTGACTTCCGAACCATACACCA
CGCCAACACTCCCACTGCCAGGTGGGCCCCACGTTCCGGTGGTGCCCACGCGTCATAGACGGTT
AAACACGACGAGTCTCGTTCTCCCCGCGCAGCAGGGAGAGCAGCCGGAATTAATACTAAATTTC
CCGCGAAGTACAGAGGCGACCCTGACCCTGGATCGCCGGAGCGGCAGAAGTACTAATGCCCGGA
GAAGAGAGAGAGAGAGATCAGAGATTCCTCGCCGGAGAAGACGACGGAGGTGAGGGGATGATGG
GGCAGCAGCTGCAGCAGCCGGAGGTGGTGGAGGTGGACGTGGAGCGGGAGCGGCGGCGGACGCT
GGTGCTGGTGAACCTGGCGTCGATCATGGAGCGCGCCGACGAGGCGCTGCTGCCGGCGGTGTAC
CAGGAGGTGGGCGCCGCGCTGCACGCCACGCCGGCGGGGCTCGGCGCGCTCACGCTGTGCCGCT
CCGCCGTGCAGGCCGCGTGCTACCCGCTCGCCGCCTACGCCGCCGCGCGCCACAACCGCGCCCA
CGTCATCGCCGCCGGGGCGTTCCTCTGGGCCGCCGCCACCTTACTCGTCGCCGTCTCCGACACC
TTCCTCCAGGTGTGAACCACGATCTCCCGTTTCTGCTTTGTGCTTCCGATGAGTTCAGATCTCC
GCTCAAAAAGTCAAAATCAATGGTGTGTTTAACACCGCAACTGATTAATTACATGAGTTTGTGC
AAATCACAGTTCCAAACAGTAGCCCTGCTCGAGAAATGGATTCACCGGTTCAAATTTTGGGGGC
ACAAATTTTCGAGATGTTTTTGTCAAACTGAAACTTACGATTAAATTGAGAATTCAAAACCGGG
CCAGATTTCAGCTGAATACAAAGCCTAGCCCAATGGGCTCTTGTAGTCGCCACCTCCACATCAC
CGTGCCGGTGAGCGCCGCGGCGGTGGCGGCGCGGTGGTGGAGGTGGAGCACGGCCGGAGCCACA
GGGCGAGGGCGGATGCCGTCGATGAGAGGGCCCCCTCATCGCCCGCGCGCACGCCGCCGCAGCG
GCGAACCGGCTTCGGCGGCGGTCGGGCGGCGCGGCGATCTTGCCCTGCCCTAGGGCACGGCGTG
CTCTGTCGCTTGGCCGGCTTCTCCGGGGACGGCGCGGGCACCAGCTTCCGCGCCTCTGCGTTAC
TGGTGTAGACGAGATGGCGGCGCGGAGACACAGGTTGCATCAAAACCTAGCGTGTAGTCGTGTA
CTGTTTTTCTCCCCTTTTGCTAGAGCTTGATTAATTATGGATATGAGCTAAACAATCTCAATTT
TACGACCAAAAAAATGGAAAGCCGCTTAGATTGGATTGAAATTTCACGAGTTCGAACTGTCGAA
ATGCTTAATTTAGAGTCTCCCGTTGCCCAACAATTTAGGGACTAATGTTTGACTCTAAGATGAC
CGGGAGGTAGCTATTCTACAATCGGCGAACTTTCTGATCATTTGTCAGAATGCACAAGTAGCAT
ATCATAGTTATCAAGACTACTATTGTTGTCAATGGCTCAATGCTATACTTTTCTCATAACTTCA
TAGAAACATGTTTGTAAAAACCTTCAGGAATATTTCGATCTCGATAAAAGAAACAAGCAAGGGC
AGTAAGTTCACATTCATGTTGCCTATAGTGATACATGACATGCTCACCAAGTAACCGAATTATT
TGGCAAGTGCTCCCTCTCTATTTTGTTGTGACCAGTATAATATGATCATTTTCAATTGCAAGCT
TACAGTGGCACTTATCATGCCAGGTAGCACTCGCAAGGGGTCTGAACGGCATTGGCCTTGCTCT
GGTGGTACCATCAATCCAGTCATTGGTGGCTGATTCCACTGAAGATGGCACGCGTGGAACAGCA
TTCGGATGGTTGCAGCTTGCTAGCAGCCTAGGCCTCATCTCTGGGGGTTTCGTCGGTTTGCTGC
TGGCACAAACCACGGTCTTCGGTATTGCAGGATGGCGCATTGCCTTCCATCTTGTGGCGATCAT
TAGTGTCTTTGTAGGGATCCTGAACTGGTTTTTTGCTGTGGATCCTCACTTTCCAAGAAGCAAT
GCTGGAACGTGTGACAGGCTGGTCACTAAACAGTCTGCTTGGCAAGTTATTGAGGAAATGATCA
AGGAGGCCAAGTTTGTGGTTCAGATTCCAACATTCCAGATTTTTGTCGCTCAGGGAGTCAGTGG
TACATTCCCTTGGTCAGCACTTTCTTTCGCGTCCATGTGGCTCGAGCTTATTGGATTCAGCCAC
AAGGAAACTGCTTTTCTAATGACGATTTTCTGGGTTGCAAGCTCATTTGGTGGTCTTCTTGGGG
GTAAGATGGGTGATTTCCTTGCTCTGCACTATCCGAATGCTGGGAGGATTGTTTTGTCACAGAT
CAGTGCTGGTTCAGCTGTGCCTCTAGCTGCAGTGCTACTACTGGGTCTCCCTGATGATCCATCC
AAGGGATTTGCCTATGGCATTGTGCTGTTCATTATGGGCGTATTCATCTCTTGGAATGGTCCTG
CTACAAACTT
Conservation Information
Conserved circRNAs NA
PMCS 0.399431709
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015