Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05500_circ_g.2 |
ID in PlantcircBase | ath_circ_000813 |
Alias | 1:1625285-1625818 |
Organism | Arabidpsis thaliana |
Position | chr1: 1625285-1625818 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G05500 |
Parent gene annotation |
Synaptotagmin-5 |
Parent gene strand | + |
Alternative splicing | AT1G05500_circ_g.1 AT1G05500_circ_g.3 |
Support reads | 1/1/2 |
Tissues | root;leaf;flower |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G05500.1:3 AT1G05500.2:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.198544118 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |