Detail information of GLYMA_16G155800_circ_g.1


General Information
CircRNA Name GLYMA_16G155800_circ_g.1
ID in PlantcircBase gma_circ_007352
Alias gma-circRNA2248
Organism Glycine max
Position chr16: 31609500-31613451  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method find_circ
Parent gene GLYMA_16G155800
Parent gene annotation hypothetical protein
Parent gene strand -
Alternative splicing GLYMA_16G155800_circ_g.2
Support reads NA
Tissues flower bud
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered KRH08539:5
KRH08540:5
KRH08541:5
KRH08542:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCAAGGCCTGAATCATGGGCAAGAGCTGCGCGCAATCTGCGGCTCTCTGGGTCAGGATAGAC
ATATGGGAATTGCATTGATCCTAGGGCTTCCATGACctctagataggtaggattttgcaatgct
gcacatgcagaaatttcagcagcaacagatacattatacggctgctttgctctccaaagatact
caattata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTAGATAGGTAGGATTTTGCAATGCTGCACATGCAGAAATTTCAGCAGCAACAGATACATTA
TACGGCTGCTTTGCTCTCCAAAGATACTCAATTATACTCAAAGGAAAAGCTCCATATCCCACTC
GAAGTCCAGCTAAACCTGAGACAATTAGAAAATTATGCATTTAATGGTTCAGATTAGGACAAGC
AACTCCAAGCCCAAGTTATAAAGTAGCTTCCCACTCAATATAACAAATCAGTAACAGGATTTTG
TACATATCAATTCAACAAATATATGAAACATAAGTATCTAATCCATAAACTGAAAAATTTACAA
CAAAACTTTGATTTTGTAGAGAGAAGTGTTGTTGGCTACTCAGCTCCAATCAATAGAATTAGGA
ATTACTTGTTGGTGTGAGTTGTCATTTAAGGAATAATTAGAGATATTGCAGAATCAGTATCAAA
TCCCCTCTTTTAAGGGTCAAAAACAATGTTAGCCTTAGTGTATTACCCAAAATAGAATCCATGA
TTGTCTCAGTGTACTCTTATATATATTTGTAGCTGTTTCATCAGAATATACGAAATAAAATTAG
AGACATAAATTCCCTTTTTATCATTACTCAGTCATTCAGATCCATCATAAACATTCTGCTTCCA
ACTCCAATACTACAATCCTACTTTGTCTAAATATATAACTTCTTTGGCTCTTGGTCATAATGGG
ATTCTATCTAGTCTGCATTGATTTCAGGATCTTTTACCGACATGTTTTAGATAATTTCCAGCTG
AATTTCTATCCAGTTCTGATCTCCTCTGCATGCATATTTCTGGTGCGCTTCAAATAGTTTAAAA
CAACTGTCGAAAGTCCCCTCCCCCCCCCCCCCCCCAATCTCATCATTCTGACAAGCTCAAACCT
CTGTTTTGCCATCAGTGACTTTTTCCAACTTTTTTTACCATTGTTCACCAGTCATTAGCTTTTC
TGATCACCACCTTCCAGATCTAGACTGCCACCCAAAGATCAGCAAAACTCCATCAGGTCCGGCC
CAAGAAGAGTTCACACATACACACAAGACCCAGCTGTCAGTTTTTGCGATGTGTGGCCATATAT
CTCAGCCATGCATGCTTCAGCCAGTCTCACCATTGCCAGATTTGTGCAGCCCTCCTGTCCGAAA
TCGGCACATGGTTTATCAGTTTCTGGCTTGTGACCCCTTTCTCAAGTTTTTTGCCACGGCTTGG
TACCTTTTACTTTCTCTCCTTGTTGACCTCAACTCAAATCTGCCCTCTTTGGTTCAAATCATAC
GAAGTGGGATTGCAGAGGAATCATCCTAGCCCCATGACTTTCCCAGAGAAATCAGCCTGGCCTA
ATGGCTATCCTAGAAAAATAATCCCGTCTCTGCAGCTTAACCTGCAAATCTTCTTGATCCCACC
ATTCTACATATTTTATTGTTTGATTTTCTGAAAAGGCAAGTAACAAGCTGAAAGCTTAGGAAGC
TTTGGCTTGAGGGGAAGTTAGAATATATGAAAATATTATATACCTTGGAGTATCTTAAACTATC
CATTAGGATTAGTTTCCTTATTTCCCCATTATCTCCTAGGATTGGTTATATTTTTTTTTGCACA
GCAAAAATAGAATTTAATTTATAATAAAAGACAGTACTAGGTGTACTGAATTACAAACAAGAGA
ATACAAAGGCAAAGATGAGCCGAACCCAACTAGAAAAGCCAAATTATGATTTGTTTGCCTAATT
AGTTAGGAGTATGATTAGTATAAATAAGGGTTAGCAGTCTTAGTTTTTAACTTTTTATCAATCT
ATCAACACAATATAATACATCTCAGTTAATATCAATTTCTGTTTCATTCTCTTTTATCTCTCTT
CCTCCCTTTATACCTAAAAACTCCATAATTTCAACAATCACCAAACACCCCAATTTTTCACTGC
TTAGTGCTTGCTTTGTCAAAACTACATCGATGTTCAAGTCAATTATACACTCTTAAACACTAGT
ATTCAGCTTAAAATTGAATTATCAGTGTTTTTGAATAGCGGCTATAGTAATTTTAGTAAATAAA
ACTTCCATCCCGCATACTCAGTGTAAGTCCAGTTTAACCTAAATCCGCTAGGCCCTAATCCTTG
TCATAATTCTCCATAATAAAAGAAACTGCAAAGAGATTATACTTCATACCATAAATTAAAATAC
GGATCAATACAATAATGTCAATTCTCAACTAAAATGCACATATTAGCATGTTGACAAGATGCCT
GAAAAACATAGTTTTATAAAGTCTGACCAAATCTTGCAAGGGAACAATTCTCAAAAGAAAAAAA
ATATTATAATAAGGGAACAACATGAATTCTCAGTTCATATTCAACTTTACTTGTGTAATAGGTT
AAGATAAAAGCATAAGCATACCAGCTCTTTTGCTAAATGTCCGAAGAACAATCAAATTATCATG
TTTCTTCACCCAACTCATCCTTGATTCAATTGCTGAAAACTCAATGTATGCTTCATCCAGTATC
ACCAATATAGGAAGCTCGAGTATTTTTAAGAGAACTTCGTCATCAATTATACTGTCATGAAATT
GTTAGATTAATATCTACAAGATCAAAAGCTAACAAAGGAAACTCAAATTTCCAGCATATTAATG
GTACAACAATCATCTCCGGTCTTACTAAATCCTGACTTCAGATTGTTAATGAAAAGGAAATATA
GAAGGACTGCCTTCATTATGGTACAATTTCTGATAGGACACTGTAATATTGCACACTAAAATAC
GCACTATTTGTATGCAAATACATCTGAACCTATAATCCACTACAATATTAATAAATGTATTCCT
AAGAGTAGGTTGGCTAGCCAAATCATATTAATCTGTTTGTGACTGAACAAAAGCACAATAGAAA
TCAAAAAGAAAAAAGTGCACAAGGAACTAGTTTTAAATGGGAAGATCTGTGGAAAAACAAATTA
GTTGAAAAAGAAAACACTACAAACATACAACTCCAGGTACCCTTTCTAACTATTCACTCTAGAG
TAAGAAAGGATAATTGACAGTTACCTTCCATCTGGATTATTTGGAGATGTTAAAAATATGCATT
TGGGCTTCTCTTGTTTAACAACTTCAGCAATTTGTTCAACATTCAAGCTGAAATCTGGCCTCCT
TGGAACTGCAGTTTAAATAATGCAGATGGTTATGCACATCTAACACGGCATAATAAGAAAAATC
CAAAACACAGTAAGTAAATCATAAACTAATGAGAAGACAATGAATAATAAAAAATTATAAGGAT
GAAGCAATCAAAAAACCCAAGATCACAACATAATGTTTCAAGAGATATGAGCCACAATACAATA
GTAAAAAGGTTAATTTGTTTAGGGCCTTTTGTTTTACAATGGACAAGCATGGCAAGATTCACAT
CATCATAGGGACAATTTTATCAGGCAAGTCTGAAAAGCTAAAGATCTGCAATCAATTTCATGAG
AAATCCCTTTACTGTCTAAGGTTCAATCAGTTGATATCTGTTTCTCATTTGACAAGTATAATAT
GATCTATATTTTTTCACTAAAAAAGAATAAATTTTAAAGCTGTCTCTAGGTAATGTTATTCTGA
CCTTTGATAACAAGTGCTCCATTAACCGCAGCATCAAATTCATACATTGTGAAGGTCGGAGGGC
AGTCCACAATCTTGTCTCCAGGATCCAGCACACAACTGGAGTATATATGAGAAGCATGTATGAT
GGTGATTGTCGTAGCTATGATGACAATTAGCATGAAGAGAAAGAATTTGAGGCTTATCTAAAAT
ACATAAGGTATTGGTTCTAACCGCATGATCAAATCAATAAGCTCATCTGCACCACACCCTGCAA
GAATATATTCAGCTTCAAGGCCTGAATCATGGGCAAGAGCTGCGCGCAATCTGCGGCTCTCTGG
GTCAGGATAGACATATGGGAATTGCATTGATCCTAGGGCTTCCATGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.010648697
Functional Information
Coding potential Y
Potential coding position 31613450-31609502(-)
31609535-31613407(-)
Potential amino acid sequence MEALGSMQFPYVYPDPESRRLRAALAHDSGLEAEYILAGCGADELIDLIMRCVLDPGDKIVDCP
PTFTMYEFDAAVNGALVIKVPRRPDFSLNVEQIAEVVKQEKPKCIFLTSPNNPDGSIIDDEVLL
KILELPILVILDEAYIEFSAIESRMSWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYL
WRAKQPYNVSVAAEISACAALQNPTYLEVMEALGSMQFPYVYPDPESRRLRAALAHDSGLEAEY
ILAGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGALVIKVPRRPDFSLNVEQIAE
VVKQEKPKCIFLTSPNNPDGSIIDDEVLLKILELPILVILDEAYIEFSAIESRMSWVKKHDNLI
VLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEISACAALQNPTYLEVMEALGS
MQFPYVYPDPESRRLRAALAHDSGLEAEYILAGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY
EFDAAVNGALVIKVPRRPDFSLNVEQIAEVVKQEKPKCIFLTSPNNPDGSIIDDEVLLKILELP
ILVILDEAYIEFSAIESRMSWVKKHDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP
YNVSVAAEISACAALQNPTYLEVMEALGSMQFPYVYPDPESRRLRAALAHDSGLEAEYILAGCG
ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGALVIKVPRRPDFSLNVEQIAEVVKQEK
PKCIFLTSPNNPDGSIIDDEVLLKILELPILVILDEAYIEFSAIESRMSWVKKHDNLIVLRTFS
KRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEISACAALQNPTYLE(-)
MCSIAKSYLSRGHGSPRINAIPICLS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2018