Detail information of LOC18051484_circ_g.1


General Information
CircRNA Name LOC18051484_circ_g.1
ID in PlantcircBase ptr_circ_000071
Alias circRNA071
Organism Poncirus trifoliata
Position chrNW_006262688.1: 8529657-8533971  JBrowse»
Reference genome Citrus_clementina_v1.0
Type   e-circRNA
Identification method CIRI
Parent gene LOC18051484
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues shoots
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered XM_006446348.2:6
XM_024191155.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGATATATGTTAACATCTCCCTATAAGCATCCATCATTTCTTTATACTTCCCTAGCCGATAA
TAGAGCTTTACAGTTTGCTTCAGTGCTTTGAATCCCcttgaggattttttcaaactctattatc
tcatttctttggtatgctgcgatcagatttgtcatagccagaatctcaggatcattcttatatc
tgcagaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGAGGATTTTTTCAAACTCTATTATCTCATTTCTTTGGTATGCTGCGATCAGATTTGTCATA
GCCAGAATCTCAGGATCATTCTTATATCTGCAGAAAAGCAATCAGATATATATGAGTGTGTGTG
TGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCATAAGCTAAACTTAGAACTGTTGTATCTCT
CATAAGTCACTTACGGCTTTGCCTCTTGTCCATCAAATGGATTCACTTGAGATTCCATCAGCAT
ATTCGCCAGAACCAGATACCTATTAAGCGAAAAGCAGTTAGAATGAGGAGACTATGATTAATTA
TTATTTCTAAATAGAAATTGAGAGATACAAAGGTAAAGCATTCAACAACAAACTGAGTGTACAA
GAATAAAAGCTGTACAGCTCAAAGTAACAAAAGAAGAATTGCTTTTGGGGTAAACAGAGGATAT
TTATGACAATTCAAATTTTCAAGGTTGGACATATAAGAGTGTATAAAACTGATTTTATATAAGT
GCTTAAATTTTTCCAAATCTGGAAATTCAATTTAGTAGAGGACGATGTAGTTGAGGAAGTATAG
AACCAAAGCACCAAAAAAGAAAAAAAAAATAAAAGAGCTTTTAACTATGCATCAAATAATTTCA
AGAAATTAGGTGTTACTGTATGAAAACCTACTCCAATAGACATGTACCAGGCCACTCCCACAAA
TAAAGGTGGGATGGTGACATTTGGATGCCAAAACAAGTCGTTCAGGCACATGGTAATACATCAC
ATGTCCTGACGCCCTCAAAGACTTGCTATGCAATTTTTCAGATTCCTAACAGAGTTCCCAGCTC
TTTTTTTTTTTTTTAAATCTTTTCTCTTTCGTAAAATTAAATTTCAAAAAAAATGGAAGGGGGC
GTCGTGGGTTGAAGATTTTTAAGGTCTTATTAAAAAAAAAGAAAAGAAAAAAAAGGTCATGATT
AATACGTAGAATTCATGGATTAGTTTTAGATACCTTCCATAGTATTAAAATGTAGCCTAAGCAA
TCAAGCAACTAGTGAGATATAATATCCCCAGAAAGTGGCTCCAAGTGGTTCCTTTGTGGACATC
TTGTCTCAGATGTATTTTCTTTATTTTACCAATATTAGCAATTTTTTTTTTCAGAGTAATATAA
AAAAAAAAAAATCAAGAGATTTGAACCTGATCATCCCTTGGGGTTATTTAATCAAGTCATCTGT
AAAAAACCTCACCTTAGCCTTTCATGCTTAGAAACCGAACACAAAGAGACAGATAATGCGAGTG
AGAAAATATAGGTATAAAAATAAATTGATATTAAAAATAAGAGATGGAGATAGAAGCCATACTT
CAAGCATTGAATACGCCTCTGGTTCCCTGCTTCGTCATAGTTCTTAAATGCTTCAAAGAAATCA
GTTGCTGCATCTGCCCATTGACGTTCTGCCATGTGCATCTTCCCACCACATTCACGAATTATTC
CCATGATCCTTGGATGTGGTATGGCTGACTTGATAGCAAGAGCTTTCTGGTATAATTGCTGCAT
TTAATTTGTTAGGTCAAAAACTGCTCAACCAAAATGGCAAATAGACACCATTGACTACCATAAT
TGTGGAAAAACGATGACAACGAATTATGAAAGGAAGTCTTTGAGCTCTTCAACAAATCATCACA
AACATTAACAGAAACTGGTTGTATTATAATGGTGATCTGGTAATCACTAATGGAGTAAATATTC
TAGAAACATGAAGTGCATCAAAATATGATAAAACTCACAAAACAAGTGTTGGGGCATGAAAACA
TTAACTGCAGTGGAAACATAGTTCACGCAAAATAACACAACAATATCAATAAAGTCACAGTCTT
GCATACAACCTGATAAACCACAGCATCTTTCTGCATCATGTTTTTGAAACTTATCTTCTCCCAG
CTTTATGCACTCATCCATAGTAAGAATTGCCTTTTAAATAGTTTACTATTGGCATATCCTAATT
TTGATAACCAAACAGATGCCATTTTCATTACAATACTTCTCTATCAGTCCAATAGCTAGGACCC
TGGATAGTCATGCCACAACTTGAGCAGTCTGTAGCAGTTTTTCTCCAAGCCATGCCCCACACTC
GCACTCTAATTTGAGGAAATAATTTGAAGTCTATTCCTTTTTGTTGCTTTGATAAATCTGTCAG
AATTCGTCATCAACCTCTACAATAAAAGTTTCAGTTCTATTCTAAAAGCCTTAGAGAATCGTTT
GTACTCATGTGGTCAAACATCTTCTTTCAACCGTTAAGACCATGCCTTTAATAAGCAAGCAGTT
AAGAGTATGATGGAAAAAAAAAAGGGCAATACAGAGGTAAATTTCCTGATTCCTGAAGAAAATT
TTGAAATTTCAGGGATACTTTCTGCTGAAACAGAATTGGCTTGTGCACTTACAAACTGAATATT
CAAAAACAACAAATTCATACATTATAACATGCAGATCAATTTTGTCAGAGATGACTGCCACCTT
CCAGGGAGTCTTGCAATGTCAATTTCGGCTAACATATCTTTCAAGCACTTATATCCACTAACTT
ATCTTTCAAGCACTTAAATCCACTCACTTAAACTTTTAAGTTTGGTTTTCTATTATGGTATAAG
AGCTAGGCCCGTTTCTGGCTCATTTCTTTATCTGTTTTAGCATATCTTTGACCATCATTTCCTT
CAAACCTCCACAAGTGATTTAAAAATTAAAAACCAATAGAGAAATACAGATAGAATGGGGAGAA
CAAAAAGAAAAAAAAGGAGGAAATGAATTCTTTTATTCAATAATTCAATAGTCTACGATCATGA
CTCCAACCGAAAATGACATAAAGCCCTACTTGTAGCGGCCAAAGACCTAATCAAAATCGAAAAT
AGAAATCTACTTCAACTAGAAAACATTGTCAACTGAAATAAGAAAATTACTTGGAAAAATAAAT
CGAAACAAAGAAGTAACAAAATATGACTCACGAGCTAAAATTAAAAAAGTGATACCATAATAAA
AAAGATAAAATATAACTCCTCAATAACCTAGTTTACCCTCCATCATCTTAACAGACCAATTCTT
TGATAATGGCATCTTAGCTTGTCAATGTTCAAGGCATTAAATAATTACTTCTACTGTTATACTC
CACATGTCAGATCTCTCTTTTAATTTTTCATATCGCTACTTTGTTGGAGAATCTCACATCAACA
AAATATTGGTTTTGATATCACTACTTTGTTGGACAGTCTTCTACCTAATAGCCTAAATTTTGGG
ATTGAATACTCTATCAAATATTAAACTTTGATTCCTTTCCAATATCATTGAATTAGCCACATAC
GGTTACATAAAACAATAGTCAAGAATACTCAGATATAGAATATCCTATTCAACCACCTTTTAGT
GCTCATTTATAATTCTACTAATACATAGGAATGATAAGTGAAATTAAGATAGAAGAATATATTT
CTATCATCAAGGTTTAACATTGAAATGAAGAAATAGAATGTTATACGGTTCCAAAATGCACAAG
ATTTACATGAACAAGTTCATGTGTGAGCATAGGCATGCTATAAGTAAATCACACAACATCTGCT
CAAGACTAAAGCACAACCAAGGATTGAAAAATCTTAAACCTAGCACAACAGAGATCAAAGTATT
GTTAAGCATTACAAATATGAAGGCACATGCAAATGTGATAAAACCCTTACCTTTAGCTTCTTGT
TATTTTTGGTTTCAGTGTACATTTGAATCTCGATTGCATAGACCTCCAGAAGTTGACTTCCTTT
CTTTTGATCATCTGTCCCATCTTCTCTTTGACAAGATTTATGAAGTTCCTTCAAAATCTGGTTG
TTTGTAACATGTTATTCTCATAAGCAACAGTATAAATCAGAAAAATCAGGATTCCAAATGGTAT
TTAATAAATGATACCTTACTCATTCGCCCATATTCACCCATATCGAACCAGATTTTGCAAAGCT
TAAGATTCGTCTTGAACCAAAGCCTCTGTAAAACAATAGAGAATAAATCACATATTGATAGGAA
AAACACCATTGTGATGCCGAAAGATCAGAAAAACATTCTGACCTCATTCTTAGCCTCTTCAAGA
GCCTTCAAAGTGGTCTGATAAAATTCTTGCAGGAGACTGAAATTCTGACTTGCAGATCCAGAAA
CAAAATCCATTATGTTGTTTATGCACTTCTCACTGTAGTTTCGTGTCACTGCAGATTTGATATA
TGTTAACATCTCCCTATAAGCATCCATCATTTCTTTATACTTCCCTAGCCGATAATAGAGCTTT
ACAGTTTGCTTCAGTGCTTTGAATCCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 8533911-8533917(-)
Potential amino acid sequence MMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLQEFYQTTLKALEEAKNERLWF
KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK
LKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL
KYLVLANMLMESQVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKGIQSTEANCK
ALLSAREV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description playing an important role in the early flowering process
Other Information
References Zeng et al., 2018