Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0656100_circ_g.6 |
ID in PlantcircBase | osa_circ_025723 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 33459707-33459826 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0656100 |
Parent gene annotation |
H+-ATPase, Blue light-induced stomatal opening of dumbbell-shape d guard cells, N uptake (Os04t0656100-01);Similar to OSIGBa0158D 24.1 protein. (Os04t0656100-03);Similar to OSIGBa0158D24.1 prote in. (Os04t0656100-04) |
Parent gene strand | + |
Alternative splicing | Os04g0656100_circ_g.1 Os04g0656100_circ_g.2 Os04g0656100_circ_g.3 Os04g0656100_circ_g.4 Os04g0656100_circ_g.5 Os04g0656100_circ_g.7 Os04g0656100_circ_g.8 |
Support reads | 3 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os04t0656100-01:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.484279097 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
33459795-33459823(+) 33459746-33459823(+) 33459716-33459709(-) |
Potential amino acid sequence |
MFGPNKLEEKKENIPIEEVFEQLKCTREGLSSEEGNRRIEMFGPNKLEEKKENIPIEEVFEQLK CTREGLSSEEGNRRIEMFGPNKLEEKKENIPIEEVFEQLKCTREGLSSEEGNRRIEMFGPNKLE EKK(+) MYARGALLRGGEPAYRDVRPQQARGEEGEHTDRGGVRAAEMYARGALLRGGEPAYRDVRPQQAR GEEGEHTDRGGVRAAEMYARGALLRGGEPAYRDVRPQQARGEEGEHTDRGGVRAAEMYARGALL RGGEPAYRDVRPQQARGEE(+) MFSFFSSSLLGPNISIRRFPSSEESPSRVHFSCSNTSSIGMFSFFSSSLLGPNISIRRFPSSEE SPSRVHFSCSNTSSIGMFSFFSSSLLGPNISIRRFPSSEESPSRVHFSCSNTSSIGMF(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |