Detail information of Os05g0558000_circ_g.1


General Information
CircRNA Name Os05g0558000_circ_g.1
ID in PlantcircBase osa_circ_028881
Alias Os_ciR10101
Organism Oryza sativa
Position chr5: 27765397-27765504  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os05g0558000
Parent gene annotation Ribosomal protein L1 family protein. (Os05t0558000-01)
Parent gene strand -
Alternative splicing Os05g0558000_circ_g.2 Os05g0558000_circ_g.3 Os05g0558000_circ_g.4 Os05g0558000_circ_g.5 Os05g0558000_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os05t0558000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGTTACTGGCTTCCTCCACACTTGCATCCTCCCCCTCCTTGTCCAATGCACGcttgctgttc
ttctccccaacatcactcaccacctctttcttgcccttcttttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGCTGTTCTTCTCCCCAACATCACTCACCACCTCTTTCTTGCCCTTCTTTTTCTTGTTACTG
GCTTCCTCCACACTTGCATCCTCCCCCTCCTTGTCCAATGCACG
Conservation Information
Conserved circRNAs NA
PMCS 0.372530864
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015