Plant Circular RNA Database

Detail information of Os08g0544500_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os08g0544500_circ_g.5
					
						ID in PlantcircBase
						osa_circ_037924
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 27283086-27286439  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							Os08g0544500						
					
						Parent gene annotation
						
							NCK-associated protein 1 (NAP1)-like protein, Homolog of SCAR/WA
VE complex components, Control of epidermal cell morphogenesis (
Os08t0544500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0544500_circ_g.1 Os08g0544500_circ_g.2 Os08g0544500_circ_g.3 Os08g0544500_circ_g.4 Os08g0544500_circ_g.6 Os08g0544500_circ_g.7 Os08g0544500_circ_g.8 						
					
						Support reads
						9
					
						Tissues
						shoot, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0544500-01:9

General Information
CircRNA Name	Os08g0544500_circ_g.5
ID in PlantcircBase	osa_circ_037924
Alias	NA
Organism	Oryza sativa
Position	chr8: 27283086-27286439 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	Os08g0544500
Parent gene annotation	NCK-associated protein 1 (NAP1)-like protein, Homolog of SCAR/WA VE complex components, Control of epidermal cell morphogenesis ( Os08t0544500-01)
Parent gene strand	-
Alternative splicing	Os08g0544500_circ_g.1 Os08g0544500_circ_g.2 Os08g0544500_circ_g.3 Os08g0544500_circ_g.4 Os08g0544500_circ_g.6 Os08g0544500_circ_g.7 Os08g0544500_circ_g.8
Support reads	9
Tissues	shoot, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0544500-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGTCAGGATAACGTGGATGAAATGGACTGAGGAACCCTTCATTTCTTAACTTTTTTGTATCAGT
TGAAAGAAAGATAATTGGGCCAACAGCCTCCAGGACctagaccaattgtaagcagcattgcctt
ctgagaccaggccctccttcccagtagacacagtagccttctccaaatgtctaatatttacaga
tgatcgtg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1079
Transcript exons: 27283086-27283231,27283699-27283892,27284286-27284364,27
284445-27284549,27285111-27285243,27285537-27285679,2728
5760-27285804,27286072-27286179,27286314-27286439
CTAGACCAATTGTAAGCAGCATTGCCTTCTGAGACCAGGCCCTCCTTCCCAGTAGACACAGTAG
CCTTCTCCAAATGTCTAATATTTACAGATGATCGTGATGATGTGACAATCATCAAGATGGATAG
CCAGTGCTTCCGCAAATCAGTTAAGTCACAAGTAATAGCAGGGACATTTTCCCCCTGAGGTTTC
GGAATGTTTTCCAGACAATGGAGGACTTGCTGGAACAGGCCCTTCAGTGTGGCATCTAGGTCAA
GAGCAACCATGCCTGGAGTACCAAGTAAGAACCGTATTCTTCCAGCACAAGATGACAAGTATGA
TAATGCATAACCTTTTATTGCTGCTATATATTTACGAACCAGGCAACAAAGTTTGCCCATTCCA
TCTAATAGGAATCCAATAGTTGGGTCTGCCGCATCAATGTCAACTGTTCTCCCTCGACTAGATT
TCGATGATGCAATCCCCACATGCTGGAAGTACCAAACCACCTCACATTGAGCCAAAGCAAGAGC
AGAAAAGACCATCTGAATATTAGGAGCAAGAAGACTAGGTTGATCTGTGAAAAACAAAACCATC
CTTCCAATTTCCTGTTTCAGAAGAATTCTCCTTTCATGATGTAGAGCATCAGCTGACACCAATG
CTTGTTCATGTACTTCCATTAACATTTTCTCAACCTGCTTTGCAACATTGTATTCCAGATCAGC
TTCCTTTTGCTTAGTACGTCCAGATTTAGCCATTCTCTTCGATTCTAAAACTTTTGGAAGGACA
TAGAGTTGATAGTTCTCATGGAGTAAGATGTACTCATCTCTGAACAGGGAGAGTACTAAATTTT
CTTTCAGAACAACCATTGCAACATCTATACTGGTCACTCGAAGTAGTTCATCTGGACAAACAAG
ATATCCAAGAAGAACCCATTCACGATATGATGTTACATTAGCCAGGTCTTGGGCCCTCATAGGA
TGAGCAGAGTTTGTAAGGATGTCAGGATAACGTGGATGAAATGGACTGAGGAACCCTTCATTTC
TTAACTTTTTTGTATCAGTTGAAAGAAAGATAATTGGGCCAACAGCCTCCAGGAC
						
					

						Genomic sequence
						
							CTAGACCAATTGTAAGCAGCATTGCCTTCTGAGACCAGGCCCTCCTTCCCAGTAGACACAGTAG
CCTTCTCCAAATGTCTAATATTTACAGATGATCGTGATGATGTGACAATCATCAAGATGGATAG
CCAGTGCTTCCGCAAATCCTGCACCATCAGCATATGTTTTTATCAATTGCTAAAAGTAAATTGT
ATGGAAAAATTAGCATATGTATGAACACACTACACAGTAAATCAATATACTTGGTTGCTTCATC
GTCATATGTTTTATTGCAAGCGTCAATAGTTTCATGTGCAAATTGCGACAATCAGTAGATAATT
GTAATTGCTTTCATCAGAAATTTAATTTACAAGGAAAAAGATGTTTGCTCATGACAAAAGATTT
TCTTTACCCTCAATCACTAGTGTGCAAATAAATAAGAGGTAGCAGTAACAGAAAATTGCATGGG
AAAGATCAGCTGAGACTGAATTAGCACTACCAGAAAGTCATGTGCATGTGTGTGGTGTATGTAT
GTGCACATGCTCATCAATGATATGAGTTGAAAATTATTAGGGCCATCTCTTTTCTTCTAAACTC
GGTGTTTTTTTGTAGATGGCAATAGGGAAACCCTTACAGTTAAGTCACAAGTAATAGCAGGGAC
ATTTTCCCCCTGAGGTTTCGGAATGTTTTCCAGACAATGGAGGACTTGCTGGAACAGGCCCTTC
AGTGTGGCATCTAGGTCAAGAGCAACCATGCCTGGAGTACCAAGTAAGAACCGTATTCTTCCAG
CACAAGATGACAAGTATGATAATGCATAACCTTTTATTGCTGCAAAAAGAACATAACAAAGAAT
GAGTTAGGCATCATCATTTTGTATCAATAAGTTATGGCATATATTTCTCTATTCTCATTTTCCA
AATGTAAGCGAGTGTCAGCAGAAGGGGGGGGGATGAAAGATCTCCTTGACAGCATATATGAAAC
TAGCCGAATATTCCGCACAACTGTGCATGGATATAGTTCAGTTCTTATGCTAGATTATAATTAT
TTAGATAATTTACAAGAACTTGTCAAATATGTTCAGCAGAGAAGGTGCAAAAACTTTAGGCCTG
TCTGATGTAGCATTACTAAGGTATAAAGTTTAATGCATGAACAAGGCAATTTTCAGACAATACA
GAAGAAATTGAAAGAAAAACTTGAATAAGTCAACAGGTCAGGAAGAACCTGCTATATATTTACG
AACCAGGCAACAAAGTTTGCCCATTCCATCTAATAGGAATCCAATAGTTGGGTCTGCCGCATCC
TAAAGGTTTTGATGACCAAGTCAGAACGGCAGAAACAGGGAATGATGATATCCAAATGAAAATG
AGCAAATTTACTAACAATGTCAACTGTTCTCCCTCGACTAGATTTCGATGATGCAATCCCCACA
TGCTGGAAGTACCAAACCACCTCACATTGAGCCAAAGCAAGAGCAGAAAAGACCATCTGCAAGA
ATATGTGAATGTTACTATGCCTTGCAATTTGCAATAACAAGGTATTAGGCACAGACAGTTGATC
TGCATTTGGCTGAAATTTTATGCAGACCCTTTCATCAATAACTATTACAGTATTACCTATAAAT
CCATATGATATGTTCCCATCATACCCGAATAAGTTTTTCTTTAAAACTTCTTGGAGCCATTACG
ATACAGAGATGTTAATATTCGAAAGGACTAGTGGGCCAACATAAAACTAGCATCAAAATGTTAA
GATCAGAAATATGGTAGGTTGACATTGCTGAAATGTTTATGGCAGTCCCAGAAAAGTAATACTC
CCTCCGTTCCAAAACATAAACACTTCTAGATTTGAAATTTGTACCCAAAATATAAGCACTTCTA
GAGTACTAATTGTCCCATTAACCACCATCCCACAGTCCCACGTTGAACCATCCCTCATTTAATG
AGTATCATAGTCTTTTCTAATCAACCATAATCTTTGCTAAAACCCGAAGTGCTTATATTTTGGA
ACAGAGGGGGTAGTACATAAAATGTGAAATTTTCAACCAACCTGAATATTAGGAGCAAGAAGAC
TAGGTTGATCTGTGAAAAACAAAACCATCCTTCCAATTTCCTGTTTCAGAAGAATTCTCCTTTC
ATGATGTAGAGCATCAGCTGACACCAATGCTTGTTCATGTACTTCCCTGCAGGAGGAATAATAT
GCATGAAGGAGAGGACATACTTTTTAGAATAATTGAACAATTTCTCATTTTGAAGTTAGGTTGC
AACAAACAATAAAACATAATTTGCCTCCTTGCAAGCGGATCACTGTATTTGCAGCAGCCCAAAA
AAATTGGAATATCCCGAAAGCTTTGCTAAATTATTCAAAGAAACAATAGGTTGCCCAAATTTCA
CTTAAAAGGCCAAGATCCCTTTTCACGTGAGTTATTTTAGGTCAGATGTCAAAGTAGGGAAGAA
GAGGTTGCGAGGGACATACATTAACATTTTCTCAACCTGCTTTGCAACATTGTATTCCAGATCA
GCTTCCTTTTGCTTAGTACGTCCAGATTTAGCCATTCTCTTCGATTCTAAAACTTTTGGAAGGA
CATAGAGTTGATAGTTCTCATGGAGTAAGATGTACTGCATAAAATATTAAGCCTAAATTAGTAT
ATCAAACAAAAAAAACTAACCATGGCCACCACATGAGATTTGATCTTTACCTCATCTCTGAACA
GGGAGAGTACTAAATTTTCTTTCAGAACAACCTGAAAAGGCACTAACAACAAATGAAGTACAGG
ACACTAGCCAACAGACATAGCTGTCTGAGAAAACAAGAGGGTATATGTGCCAGTGTATGGTCGT
GTGTAAGGAATCCGTGCATGTTACCACGAGACATCATATCAGTTATCCTTCCACATTTTTAATT
ATCTAAAAATATCAGTTAATAAATTACTTAAATAGAGAGATTTATTGTTAAACTGCATGAATAC
ATTTCAGGGAAACAAATACCAAAAGAGAAGCACACAACGTACCATTGCAACATCTATACTGGTC
ACTCGAAGTAGTTCATCTGGACAAACAAGATATCCAAGAAGAACCCATTCACGATATGATGTTA
CATTAGCCAGGTCTTGGGCCCTCTGAGAGGAAACAGAATCATGATAATTGTCCAAATTTTAATA
CCTCTCAATATTATGATATCGCTAATAAATGAAAGTATATGTAAATCTGATGATAATTCACCCC
TAGCTAATGAAATAATCAAATAACTAACCATAGGATGAGCAGAGTTTGTAAGGATGTCAGGATA
ACGTGGATGAAATGGACTGAGGAACCCTTCATTTCTTAACTTTTTTGTATCAGTTGAAAGAAAG
ATAATTGGGCCAACAGCCTCCAGGAC
						
					

			
		

Sequences
Splice junction sequence	TGTCAGGATAACGTGGATGAAATGGACTGAGGAACCCTTCATTTCTTAACTTTTTTGTATCAGT TGAAAGAAAGATAATTGGGCCAACAGCCTCCAGGACctagaccaattgtaagcagcattgcctt ctgagaccaggccctccttcccagtagacacagtagccttctccaaatgtctaatatttacaga tgatcgtg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1079 Transcript exons: 27283086-27283231,27283699-27283892,27284286-27284364,27 284445-27284549,27285111-27285243,27285537-27285679,2728 5760-27285804,27286072-27286179,27286314-27286439 CTAGACCAATTGTAAGCAGCATTGCCTTCTGAGACCAGGCCCTCCTTCCCAGTAGACACAGTAG CCTTCTCCAAATGTCTAATATTTACAGATGATCGTGATGATGTGACAATCATCAAGATGGATAG CCAGTGCTTCCGCAAATCAGTTAAGTCACAAGTAATAGCAGGGACATTTTCCCCCTGAGGTTTC GGAATGTTTTCCAGACAATGGAGGACTTGCTGGAACAGGCCCTTCAGTGTGGCATCTAGGTCAA GAGCAACCATGCCTGGAGTACCAAGTAAGAACCGTATTCTTCCAGCACAAGATGACAAGTATGA TAATGCATAACCTTTTATTGCTGCTATATATTTACGAACCAGGCAACAAAGTTTGCCCATTCCA TCTAATAGGAATCCAATAGTTGGGTCTGCCGCATCAATGTCAACTGTTCTCCCTCGACTAGATT TCGATGATGCAATCCCCACATGCTGGAAGTACCAAACCACCTCACATTGAGCCAAAGCAAGAGC AGAAAAGACCATCTGAATATTAGGAGCAAGAAGACTAGGTTGATCTGTGAAAAACAAAACCATC CTTCCAATTTCCTGTTTCAGAAGAATTCTCCTTTCATGATGTAGAGCATCAGCTGACACCAATG CTTGTTCATGTACTTCCATTAACATTTTCTCAACCTGCTTTGCAACATTGTATTCCAGATCAGC TTCCTTTTGCTTAGTACGTCCAGATTTAGCCATTCTCTTCGATTCTAAAACTTTTGGAAGGACA TAGAGTTGATAGTTCTCATGGAGTAAGATGTACTCATCTCTGAACAGGGAGAGTACTAAATTTT CTTTCAGAACAACCATTGCAACATCTATACTGGTCACTCGAAGTAGTTCATCTGGACAAACAAG ATATCCAAGAAGAACCCATTCACGATATGATGTTACATTAGCCAGGTCTTGGGCCCTCATAGGA TGAGCAGAGTTTGTAAGGATGTCAGGATAACGTGGATGAAATGGACTGAGGAACCCTTCATTTC TTAACTTTTTTGTATCAGTTGAAAGAAAGATAATTGGGCCAACAGCCTCCAGGAC
Genomic sequence	CTAGACCAATTGTAAGCAGCATTGCCTTCTGAGACCAGGCCCTCCTTCCCAGTAGACACAGTAG CCTTCTCCAAATGTCTAATATTTACAGATGATCGTGATGATGTGACAATCATCAAGATGGATAG CCAGTGCTTCCGCAAATCCTGCACCATCAGCATATGTTTTTATCAATTGCTAAAAGTAAATTGT ATGGAAAAATTAGCATATGTATGAACACACTACACAGTAAATCAATATACTTGGTTGCTTCATC GTCATATGTTTTATTGCAAGCGTCAATAGTTTCATGTGCAAATTGCGACAATCAGTAGATAATT GTAATTGCTTTCATCAGAAATTTAATTTACAAGGAAAAAGATGTTTGCTCATGACAAAAGATTT TCTTTACCCTCAATCACTAGTGTGCAAATAAATAAGAGGTAGCAGTAACAGAAAATTGCATGGG AAAGATCAGCTGAGACTGAATTAGCACTACCAGAAAGTCATGTGCATGTGTGTGGTGTATGTAT GTGCACATGCTCATCAATGATATGAGTTGAAAATTATTAGGGCCATCTCTTTTCTTCTAAACTC GGTGTTTTTTTGTAGATGGCAATAGGGAAACCCTTACAGTTAAGTCACAAGTAATAGCAGGGAC ATTTTCCCCCTGAGGTTTCGGAATGTTTTCCAGACAATGGAGGACTTGCTGGAACAGGCCCTTC AGTGTGGCATCTAGGTCAAGAGCAACCATGCCTGGAGTACCAAGTAAGAACCGTATTCTTCCAG CACAAGATGACAAGTATGATAATGCATAACCTTTTATTGCTGCAAAAAGAACATAACAAAGAAT GAGTTAGGCATCATCATTTTGTATCAATAAGTTATGGCATATATTTCTCTATTCTCATTTTCCA AATGTAAGCGAGTGTCAGCAGAAGGGGGGGGGATGAAAGATCTCCTTGACAGCATATATGAAAC TAGCCGAATATTCCGCACAACTGTGCATGGATATAGTTCAGTTCTTATGCTAGATTATAATTAT TTAGATAATTTACAAGAACTTGTCAAATATGTTCAGCAGAGAAGGTGCAAAAACTTTAGGCCTG TCTGATGTAGCATTACTAAGGTATAAAGTTTAATGCATGAACAAGGCAATTTTCAGACAATACA GAAGAAATTGAAAGAAAAACTTGAATAAGTCAACAGGTCAGGAAGAACCTGCTATATATTTACG AACCAGGCAACAAAGTTTGCCCATTCCATCTAATAGGAATCCAATAGTTGGGTCTGCCGCATCC TAAAGGTTTTGATGACCAAGTCAGAACGGCAGAAACAGGGAATGATGATATCCAAATGAAAATG AGCAAATTTACTAACAATGTCAACTGTTCTCCCTCGACTAGATTTCGATGATGCAATCCCCACA TGCTGGAAGTACCAAACCACCTCACATTGAGCCAAAGCAAGAGCAGAAAAGACCATCTGCAAGA ATATGTGAATGTTACTATGCCTTGCAATTTGCAATAACAAGGTATTAGGCACAGACAGTTGATC TGCATTTGGCTGAAATTTTATGCAGACCCTTTCATCAATAACTATTACAGTATTACCTATAAAT CCATATGATATGTTCCCATCATACCCGAATAAGTTTTTCTTTAAAACTTCTTGGAGCCATTACG ATACAGAGATGTTAATATTCGAAAGGACTAGTGGGCCAACATAAAACTAGCATCAAAATGTTAA GATCAGAAATATGGTAGGTTGACATTGCTGAAATGTTTATGGCAGTCCCAGAAAAGTAATACTC CCTCCGTTCCAAAACATAAACACTTCTAGATTTGAAATTTGTACCCAAAATATAAGCACTTCTA GAGTACTAATTGTCCCATTAACCACCATCCCACAGTCCCACGTTGAACCATCCCTCATTTAATG AGTATCATAGTCTTTTCTAATCAACCATAATCTTTGCTAAAACCCGAAGTGCTTATATTTTGGA ACAGAGGGGGTAGTACATAAAATGTGAAATTTTCAACCAACCTGAATATTAGGAGCAAGAAGAC TAGGTTGATCTGTGAAAAACAAAACCATCCTTCCAATTTCCTGTTTCAGAAGAATTCTCCTTTC ATGATGTAGAGCATCAGCTGACACCAATGCTTGTTCATGTACTTCCCTGCAGGAGGAATAATAT GCATGAAGGAGAGGACATACTTTTTAGAATAATTGAACAATTTCTCATTTTGAAGTTAGGTTGC AACAAACAATAAAACATAATTTGCCTCCTTGCAAGCGGATCACTGTATTTGCAGCAGCCCAAAA AAATTGGAATATCCCGAAAGCTTTGCTAAATTATTCAAAGAAACAATAGGTTGCCCAAATTTCA CTTAAAAGGCCAAGATCCCTTTTCACGTGAGTTATTTTAGGTCAGATGTCAAAGTAGGGAAGAA GAGGTTGCGAGGGACATACATTAACATTTTCTCAACCTGCTTTGCAACATTGTATTCCAGATCA GCTTCCTTTTGCTTAGTACGTCCAGATTTAGCCATTCTCTTCGATTCTAAAACTTTTGGAAGGA CATAGAGTTGATAGTTCTCATGGAGTAAGATGTACTGCATAAAATATTAAGCCTAAATTAGTAT ATCAAACAAAAAAAACTAACCATGGCCACCACATGAGATTTGATCTTTACCTCATCTCTGAACA GGGAGAGTACTAAATTTTCTTTCAGAACAACCTGAAAAGGCACTAACAACAAATGAAGTACAGG ACACTAGCCAACAGACATAGCTGTCTGAGAAAACAAGAGGGTATATGTGCCAGTGTATGGTCGT GTGTAAGGAATCCGTGCATGTTACCACGAGACATCATATCAGTTATCCTTCCACATTTTTAATT ATCTAAAAATATCAGTTAATAAATTACTTAAATAGAGAGATTTATTGTTAAACTGCATGAATAC ATTTCAGGGAAACAAATACCAAAAGAGAAGCACACAACGTACCATTGCAACATCTATACTGGTC ACTCGAAGTAGTTCATCTGGACAAACAAGATATCCAAGAAGAACCCATTCACGATATGATGTTA CATTAGCCAGGTCTTGGGCCCTCTGAGAGGAAACAGAATCATGATAATTGTCCAAATTTTAATA CCTCTCAATATTATGATATCGCTAATAAATGAAAGTATATGTAAATCTGATGATAATTCACCCC TAGCTAATGAAATAATCAAATAACTAACCATAGGATGAGCAGAGTTTGTAAGGATGTCAGGATA ACGTGGATGAAATGGACTGAGGAACCCTTCATTTCTTAACTTTTTTGTATCAGTTGAAAGAAAG ATAATTGGGCCAACAGCCTCCAGGAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_018134 						
					
						PMCS
						0.219877959

Conservation Information
Conserved circRNAs	osi_circ_018134
PMCS	0.219877959

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							27286318-27286387(-)
27283109-27286401(-)
						
						Potential amino acid sequence
						
							MRAQDLANVTSYREWVLLGYLVCPDELLRVTSIDVAMVVLKENLVLSLFRDEYILLHENYQLYV
LPKVLESKRMAKSGRTKQKEADLEYNVAKQVEKMLMEVHEQALVSADALHHERRILLKQEIGRM
VLFFTDQPSLLAPNIQMVFSALALAQCEVVWYFQHVGIASSKSSRGRTVDIDAADPTIGFLLDG
MGKLCCLVRKYIAAIKGYALSYLSSCAGRIRFLLGTPGMVALDLDATLKGLFQQVLHCLENIPK
PQGENVPAITCDLTDLRKHWLSILMIVTSSRSSVNIRHLEKATVSTGKEGLVSEGNAAYNWSRS
WRLLAQLSFFQLIQKS*(-)
MLLTIGLGPGGCWPNYLSFN*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	27286318-27286387(-) 27283109-27286401(-)
Potential amino acid sequence	MRAQDLANVTSYREWVLLGYLVCPDELLRVTSIDVAMVVLKENLVLSLFRDEYILLHENYQLYV LPKVLESKRMAKSGRTKQKEADLEYNVAKQVEKMLMEVHEQALVSADALHHERRILLKQEIGRM VLFFTDQPSLLAPNIQMVFSALALAQCEVVWYFQHVGIASSKSSRGRTVDIDAADPTIGFLLDG MGKLCCLVRKYIAAIKGYALSYLSSCAGRIRFLLGTPGMVALDLDATLKGLFQQVLHCLENIPK PQGENVPAITCDLTDLRKHWLSILMIVTSSRSSVNIRHLEKATVSTGKEGLVSEGNAAYNWSRS WRLLAQLSFFQLIQKS(-) MLLTIGLGPGGCWPNYLSFN(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0544500_circ_g.5

Address

Any questions?

Supported by