Detail information of Csa2G379160_circ_g.2


General Information
CircRNA Name Csa2G379160_circ_g.2
ID in PlantcircBase csa_circ_001209
Alias Chr2:19211276_19214694
Organism Cucumis sativus
Position chrChr2: 19211276-19214694  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa2G379160
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa2G379160_circ_g.1
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa2G379160.2:4
Csa2G379160.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCCTCCAAAGAGAAGACGATGGCTGAAGAGGATCTCTGTTCCAATGATGAAGTTAACAATGGG
GACTTCAAACAAATTCTACTAAAGACTGATCCCGAGgttgcaacagtgggttaaaaggaaaatt
cttgatgctccttctgaagccgatgctgaaccaacagcctcaatcaagtgtcctcatggacaac
ttttgcca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 790
Transcript exons: 19211276-19211560,19211874-19212081,19212759-19212827,19
214467-19214694
GTTGCAACAGTGGGTTAAAAGGAAAATTCTTGATGCTCCTTCTGAAGCCGATGCTGAACCAACA
GCCTCAATCAAGTGTCCTCATGGACAACTTTTGCCAGAGCAAGCTGCCGGTGCTAAGCGAGTGC
TGATTCCAGAAGATCTCTGGCTTTTCATATATGAAGATGCTTTGACTGTAAAACCTGATGATCC
TACAGGGGTTCCAACTTTTCCCTCTGATTCAAGACAATGCTCTCTGTGCAGTGAGGAATTGTCT
GAAGTGGCAGTTATGGAAGATTCTATAAGAGGAGTGAAGCTTAAACAGCGACAAAATCACGAAA
GATTAGCCGTTGGAAAATTCATTCCACTTTCTTTGAATTGCAAGTATTATTTGGTGCCTACATC
ATGGCTTTCAAAGTGGAGAAACTACATCAATGCAAGTGGAAAGAGTGCTTCATTTGTAGAGAAG
CCTGAAAATTTGGATGGTGTGATCAATCTTCTGAGGTGTGAAAAGCATTCACGCCTCCTTGAAA
GACCTCCTGACCTGATCTGCAAACGTGCTACTATGCAGCAGAAGTCTGCTGCAGATGTTTTAAC
ACTCATTTCAGAGAACGACTGGAAATCCTTCTGTGAAGAATGGGAAGGTAGTGAGGCATGTGGC
ATCTCTGCTGTGGTTGAGTCAAGTAGTTGTGTAGGGAATGATATCGATGGATCCTCCAAAGAGA
AGACGATGGCTGAAGAGGATCTCTGTTCCAATGATGAAGTTAACAATGGGGACTTCAAACAAAT
TCTACTAAAGACTGATCCCGAG

Genomic sequence GTTGCAACAGTGGGTTAAAAGGAAAATTCTTGATGCTCCTTCTGAAGCCGATGCTGAACCAACA
GCCTCAATCAAGTGTCCTCATGGACAACTTTTGCCAGAGCAAGCTGCCGGTGCTAAGCGAGTGC
TGATTCCAGAAGATCTCTGGCTTTTCATATATGAAGATGCTTTGACTGTAAAACCTGATGATCC
TACAGGGGTTCCAACTTTTCCCTCTGATTCAAGACAATGCTCTCTGTGCAGTGAGGAATTGTCT
GAAGTGGCAGTTATGGAAGATTCTATAAGGTCATTTCTGTTAGAATTAGCAGGCTTGTTGTATG
TTGAAAGTCCGAGAGTTTGTTAAGATTTTATAGTGTCCTAATTATCTTTTATTATTTTTATTAT
GGGTTCTATAACCTATAAATATATGCTCCCTGTATCACTATGAGATAGAGAAAAATAATAAGAA
TATAGCATCATGGTTTTTCTCCCTGTTCTAGGGTTTCATCGTAAAATAGTTTGTCTTTCTATTT
TTCTTCATTCGATAATTTCAGTATGTTCAAGTTAACTTTTTAGTTGATTTGGCTGAAGAATGAC
TTAACCTGTTGTATCTTTTCAGAGGAGTGAAGCTTAAACAGCGACAAAATCACGAAAGATTAGC
CGTTGGAAAATTCATTCCACTTTCTTTGAATTGCAAGTATTATTTGGTGCCTACATCATGGCTT
TCAAAGTGGAGAAACTACATCAATGCAAGTGGAAAGAGTGCTTCATTTGTAGAGAAGCCTGAAA
ATTTGGATGGTGTGATCAATCTTCTGAGGTGTGAAAAGGTAATGTCTACTGACATGAGATTTTT
CAATTATTGATTGTCCAGTAAAATCTTTTTAGGCAGCATTTCAGAATGCATGATGTCATTTGAT
TATTTAAATTTGTATACCTTAACTTAGTGAAAGGAAATTCTTCTGGTCAATTTGGCTGTGATTG
TGAAGCATGGTTCTAAATTTTCTCTATTGATCTTATGGTAATTTGTCTTAATTTTCTATTGATC
TCATTATAATTTAGCTTAAAAACTAATCAAGGAATTTCATTATATTCATATCCTTTCTAATATT
AGATTGTTGAGTACTTTTTTGGTTTTTTGTTGGGGTAAACGATACAACGATACATTAGAGAATG
TATTTTGTACATAGCTCCATGTAAGACATAAAGGAACGAGTAAATATGGGACTATGGGGTGTTT
CCAATCCTTTAAAATGAGAATTTGATTAAAAAAGATAATTTTAAATATAAACATACGATCTTTA
TTCATATAAATCTATTAATTATGAAGATAGTAAAGATTCAAATATTTATGAATTTTCGGTACAA
GGAAAAAGTAATCAAGAAAGTTCTCATAAGTATAATGTTTCGATTTTTCCTCTATTAGCTTGAG
CTCGTATGAATTGTTTTTCTTCTAATATTAAAATTATTGCATTAATTTGATTCATGTGCATGCA
TCTGGATGCAGCATTCACGCCTCCTTGAAAGACCTCCTGACCTGATCTGCAAACGTGCTACTAT
GCAGCAGAAGTCTGCTGTAAGTATACTGCACAAGTTTATTTGGATGCAATATCTTTTCTTTATA
TCTTAAAGCAATTTCTCGAACCATCTTCTTCCCTGGAAACATTTTTTGAACTTTACTTTTCTTA
TACATATTGTTTATTATTTTTTTGGGGAAGAAATGGGAGATCATATTAAAAATGAAAGGTGAAA
AAGATAAAAATAGCCCACAAGTCCATTACAAAAAGCTCTTCCACCTGGTCATCAAAAGTATAGA
GAGACTATGATCGAGTAAATATTTAAACATTTACAAACCTACACAAAAAAGCCGAGCGAAGTAG
GCAGGTTAAGGAGTCCTATAAGTTGTTGAAAAAATGAGTATTCCTTTTCAACCAGAGTTTCCAT
ATTAGAGCATTGGAAGATGTTCTTCCGCTCATTGGTAGTACGCCTTTAAGGGGCATGCATAGAT
GCTTTGGTGCAGTGGAGTGTTTGCTCTCCTTTGGAGACTTTGGTTCGAAAGAAACTCAAGAATC
TTCAACAACCATGAGTCCAACAGGGAGGTGTTATGAGATCTTGTCATACTTTTTGCTTCTTGGT
ATAGTAATTCTAAGTAATTTTGTAACTATAACCTATCTCAAATTGTCCCCAGTTGGATTTTTGT
TTTGTAACCATTTGGTATGTCATGTGGGGTAATCTCATCATCCCTTCTTTTCTTAACCTTCTTT
CGATAATGAAAAGTTTGTTCTTATTTTTTCAAAAAAAAATTTTTTGATCATGTTGAGCCATAGG
GTTATCTTTCTTCCTTTTTTGTTTTAATTTTTAAAAATAACTACACATACATAATCTTTTACTT
ATATATTTTATTAATATTATTTAAAAAAATTCTTTGATTACGTTGACACCACACAGTTCTGAGT
TCAGTTATTATTATTTTTACGAGTTCAGTTATTATTAATCATTTAGAGATGTTGTTTTACAATG
TTTTGAGTTCTTTCATTTTTATTTTTACCTTATTATTTTAATGTTATAAATATTTTTCTGTTTG
TTTCTTTAAGGGAAAAAATTAACTTTTGACTTTATACTTGTTAAGTGTTGCAATTTTTACCCAT
TTTTTCAATATGTGCTAATTGGCCCACTAGTTTTGACAAGAATAGTGAAAGACTTTTTATATCC
AATGTCCCCAAAGGGACTAGTGAAAGAATTCTTATAAACTCATTACTTAAAAATGAAATTTTGC
TCAAAAATAATTTTGAACATGCACAAAATAACCATTAAGTAACTTTGTCAAAATTCATAAATTT
CAACAATAAATTTTTTTCTCTAATCCCCCTTCTCCTAAAATTTTATCAATTTCATGTTGTATAT
TAGTTTTACAATTCATTGAACTCATAAGAGATTTTTTCACGGTACTTGAAGCAAGAACTTGTCA
AAGGGTCAAAATTGCAACACTTGTTTAAGATTAAGATACAACTTGACAAGTGTAGGTGTCAAAA
TTAAATTTTTTTTCCCTTTTTTAATCATATGCCATGACTTCTCTTACACAATTTCTGAAAGTTA
CTCTCATTTATGGTCAATCATGTGATTATAAATCCTATGAAGTAAAAAAAAGTCCTTTCCCTTC
ACATTTCATATCTTTTTACGTCCTTTTTTTTTTTGTTTTGTTCCCTCAATTTTAGGCAGATGTT
TTAACACTCATTTCAGAGAACGACTGGAAATCCTTCTGTGAAGAATGGGAAGGTAGTGAGGCAT
GTGGCATCTCTGCTGTGGTTGAGTCAAGTAGTTGTGTAGGGAATGATATCGATGGATCCTCCAA
AGAGAAGACGATGGCTGAAGAGGATCTCTGTTCCAATGATGAAGTTAACAATGGGGACTTCAAA
CAAATTCTACTAAAGACTGATCCCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.47006993
Functional Information
Coding potential Y
Potential coding position 19211545-19211290(+)
Potential amino acid sequence MEDSIRGVKLKQRQNHERLAVGKFIPLSLNCKYYLVPTSWLSKWRNYINASGKSASFVEKPENL
DGVINLLRCEKHSRLLERPPDLICKRATMQQKSAADVLTLISENDWKSFCEEWEGSEACGISAV
VESSSCVGNDIDGSSKEKTMAEEDLCSNDEVNNGDFKQILLKTDPEVATVG*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhu et al., 2019