Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G38540_circ_g.6 |
ID in PlantcircBase | ath_circ_017237 |
Alias | 2:16130400-16130685 |
Organism | Arabidpsis thaliana |
Position | chr2: 16130400-16130685 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT2G38540 |
Parent gene annotation |
Non-specific lipid-transfer protein |
Parent gene strand | + |
Alternative splicing | 2_circ_ag.2 AT2G38540_circ_g.1 AT2G38540_circ_g.2 AT2G38540_circ_g.3 AT2G38540_circ_g.4 AT2G38540_circ_g.5 AT2G38540_circ_g.7 AT2G38540_circ_g.8 AT2G38540_circ_g.9 AT2G38540_circ_g.10 AT2G38540_circ_g.11 |
Support reads | 1/1 |
Tissues | seedling;flower |
Exon boundary | No-No |
Splicing signals | CT-AC |
Number of exons covered | AT2G38540.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.451224298 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |