Detail information of AT2G38540_circ_g.6


General Information
CircRNA Name AT2G38540_circ_g.6
ID in PlantcircBase ath_circ_017237
Alias 2:16130400-16130685
Organism Arabidpsis thaliana
Position chr2: 16130400-16130685  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G38540
Parent gene annotation Non-specific lipid-transfer protein
Parent gene strand +
Alternative splicing 2_circ_ag.2 AT2G38540_circ_g.1 AT2G38540_circ_g.2 AT2G38540_circ_g.3 AT2G38540_circ_g.4 AT2G38540_circ_g.5 AT2G38540_circ_g.7 AT2G38540_circ_g.8 AT2G38540_circ_g.9 AT2G38540_circ_g.10 AT2G38540_circ_g.11
Support reads 1/1
Tissues seedling;flower
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G38540.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTAAAAACCTCAACAGCATAGCCAAGACGACCCCAGACCGTCAGCAAGCTTGCAATTGCATTC
AAGGTGCCGCTAGAGCCTTAGGCTCTGGTCTCAACGactacctaagagatcaatatggctggag
tgatgaagttggcatgcttgctcttggcctgcatgattgtggccggtccaatcacatcgaacgc
tgcgctaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTACCTAAGAGATCAATATGGCTGGAGTGATGAAGTTGGCATGCTTGCTCTTGGCCTGCATGA
TTGTGGCCGGTCCAATCACATCGAACGCTGCGCTAAGCTGTGGCTCAGTTAACAGCAACTTGGC
AGCGTGCATTGGCTACGTGCTCCAAGGTGGTGTCATTCCCCCAGCGTGTTGCTCCGGCGTTAAA
AACCTCAACAGCATAGCCAAGACGACCCCAGACCGTCAGCAAGCTTGCAATTGCATTCAAGGTG
CCGCTAGAGCCTTAGGCTCTGGTCTCAACG
Conservation Information
Conserved circRNAs NA
PMCS 0.451224298
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020